pycom09g10580

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001028
Physical Location & Seq
Reverse (-)
8649320 .. 8649689
370 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10580.1

Sequence Viewer

Length: 312 bp
ATGCGAAAGAATATAAACGTTAATGGTGTAGGTAATGATAATGGTCTTTCAACATCTCAGAACCTCCAGACCCAGAAGATGCTTTTCCACGGGAGATGTGAGAAGGGCTTATACCCATTCCCAGGTGGCGGTGGACAGTTCAATTACCCTATTTCAATGTGTAGGCATCCGAGTCTCAGCCCAGAAATGGTGGCCACCAAACCTAAAGTGGCGACCACCAGACCCGACACAGTCGTATCATTTGACAAAATATTGTCACCAGTTGACTACACATGTCAAAGTGATAGAATGATCAGGGGAAGCAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

104

Amino Acids

11.36

Weight (kDa)

9.41

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AclI AACGTT 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 3 cut(s) 122, 128, 187
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 3 cut(s) 51, 142, 156
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 309
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BalI TGGCCA 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 179
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 69, 175
BpmI CTGGAG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 88, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 128, 187
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 88, 121
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 122, 128, 187
BseMII CTCAG 2 cut(s) 71, 190
BseNI ACTGG 1 cut(s) 260
BshFI GGCC 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 122, 128, 187
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 70, 189
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 88, 121
BssMI GATC 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 138, 232
BstDEI CTNAG 2 cut(s) 57, 176
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 309
CviAII CATG 1 cut(s) 273
CviJI RGCY 4 cut(s) 108, 180, 194, 306
CviKI_1 RGCY 4 cut(s) 108, 180, 194, 306
DdeI CTNAG 2 cut(s) 57, 176
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 276
FaiI YATR 3 cut(s) 14, 112, 274
FatI CATG 1 cut(s) 272
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 276
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 134, 265
Hpy188I TCNGA 3 cut(s) 60, 171, 311
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 134, 265
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 138, 232
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 57, 176
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 8 cut(s) 80, 86, 108, 135, 195, 232, 273, 280
LweI GCATC 2 cut(s) 69, 175
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 255
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 1 cut(s) 142
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NdeII GATC 1 cut(s) 291
NlaIII CATG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 255
NspI RCATGY 1 cut(s) 276
PciI ACATGT 1 cut(s) 272
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PscI ACATGT 1 cut(s) 272
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 309
PsyI GACNNNGTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 1 cut(s) 291
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 123
SetI ASST 6 cut(s) 21, 34, 66, 127, 205, 308
SfaNI GCATC 2 cut(s) 69, 175
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 129
SspI AATATT 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 138, 232
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 142
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 230
XceI RCATGY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.