Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

15843560 .. 15844572

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGCCTTCTCAAGAACCTCCCTCCTGTTCTGTACATCCTATGGATGAGTTCCCTCTACTTTGCTGCATCAACCGTTAATGCAGCTACATTCAATATCCGAAACAACTGTCCCTTCACTGTTTGGGCTGCTGCTGTGCCGGGCGGCGGCAGACAGCTTGGCAATGGCCAAACATGGATACTAAATGTAAACGCCGGAACTAAAGGGGCTCGCATTTGGGCCCGAACAAATTGCAACTTCGATGGAGCAGGACGTGGAAGATGCCAGACCGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCCGAATATGCACTGAACCAATACAACAACTTGGATTTCTTTGATATCTCTCTAGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCCACCTCTAACGGTTGCACTAGGGGTATCAAATGCACGGCGGATATAAACGGACAGTGCCCCGCTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAACTGATCAGTATTGTTGTAATTCTGGAAACTGTGGTCCTACAGACTATTCTAGGTTTTTTAAAAGTCGTTGCCCGGATGCTTATAGTTACCCTAAGGATGATGCAACCAGTACATTTACTTGCCCAGGTGGCACAAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

229

Amino Acids

24.75

Weight (kDa)

8.31

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 229	8.5e-63	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	479
AciI	CCGC	5 cut(s)	144, 147, 282, 455, 477
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	2 cut(s)	35, 640
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	94, 394, 526
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	2 cut(s)	86, 157
AluI	AGCT	2 cut(s)	86, 157
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	166, 219
ApaI	GGGCCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	65, 83, 128, 131
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsiGI	ACCGGT	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	219, 220, 563
AsuC2I	CCSGG	3 cut(s)	141, 495, 602
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	563
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	2 cut(s)	223, 476
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	3 cut(s)	211, 223, 493
BbvI	GCAGC	4 cut(s)	52, 95, 115, 118
BccI	CCATC	2 cut(s)	236, 380
BceAI	ACGGC	1 cut(s)	468
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	171
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	3 cut(s)	141, 495, 602
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	380, 435, 579
BfmI	CTRYAG	2 cut(s)	567, 667
BfuI	GTATCC	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	657
BisI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
BlsI	GCNGC	6 cut(s)	67, 85, 130, 133, 146, 149
Bme1390I	CCNGG	4 cut(s)	141, 495, 602, 654
Bme18I	GGWCC	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	219, 220, 563
BmiI	GGNNCC	2 cut(s)	221, 492
BmrFI	CCNGG	4 cut(s)	141, 495, 602, 654
BmsI	GCATC	4 cut(s)	77, 251, 595, 619
BoxI	GACNNNNGTC	1 cut(s)	411
BpuMI	CCSGG	3 cut(s)	141, 495, 602
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	636
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	4 cut(s)	36, 51, 610, 631
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	223, 476
BseXI	GCAGC	4 cut(s)	52, 95, 115, 118
BshFI	GGCC	2 cut(s)	168, 221
BshTI	ACCGGT	1 cut(s)	269
BsiSI	CCGG	5 cut(s)	140, 195, 270, 495, 602
BslFI	GGGAC	3 cut(s)	96, 383, 399
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	3 cut(s)	96, 383, 399
BsnI	GGCC	2 cut(s)	168, 221
Bso31I	GGTCTC	1 cut(s)	290
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	4 cut(s)	211, 223, 476, 493
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	5 cut(s)	144, 147, 282, 455, 477
BspANI	GGCC	2 cut(s)	168, 221
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	221, 492
BspTNI	GGTCTC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	8 cut(s)	76, 110, 121, 278, 428, 471, 520, 560
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	480, 621
BstF5I	GGATG	4 cut(s)	36, 51, 610, 631
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 657
BstNI	CCWGG	1 cut(s)	654
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSCI	CCNGG	4 cut(s)	139, 493, 600, 652
BstSFI	CTRYAG	2 cut(s)	567, 667
BstSLI	GKGCMC	2 cut(s)	223, 476
BstV1I	GCAGC	4 cut(s)	52, 95, 115, 118
Bsu36I	CCTNAGG	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	168, 221
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	36, 51, 610, 631
BtsIMutI	CAGTG	4 cut(s)	117, 338, 476, 516
Cac8I	GCNNGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	219, 220, 563
Csp6I	GTAC	2 cut(s)	34, 639
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	3 cut(s)	174, 513, 687
CviJI	RGCY	9 cut(s)	6, 86, 128, 157, 168, 209, 221, 303, 491
CviKI_1	RGCY	9 cut(s)	6, 86, 128, 157, 168, 209, 221, 303, 491
CviQI	GTAC	2 cut(s)	34, 639
DdeI	CTNAG	2 cut(s)	480, 621
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
DraI	TTTAAA	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	470
Eco24I	GRGCYC	3 cut(s)	211, 223, 493
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	3 cut(s)	211, 223, 493
FaeI	CATG	3 cut(s)	177, 516, 690
FaiI	YATR	9 cut(s)	43, 175, 306, 336, 461, 514, 612, 669, 688
FaqI	GGGAC	3 cut(s)	96, 383, 399
FatI	CATG	3 cut(s)	173, 512, 686
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
FokI	GGATG	4 cut(s)	23, 58, 617, 638
FriOI	GRGCYC	3 cut(s)	211, 223, 493
Fsp4HI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
FspBI	CTAG	3 cut(s)	380, 435, 579
GluI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
HaeIII	GGCC	2 cut(s)	168, 221
HapII	CCGG	5 cut(s)	140, 195, 270, 495, 602
Hin1II	CATG	3 cut(s)	177, 516, 690
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HpaII	CCGG	5 cut(s)	140, 195, 270, 495, 602
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	190, 311
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	13, 552
Hpy8I	GTNNAC	2 cut(s)	190, 311
HpyAV	CCTTC	2 cut(s)	17, 124
HpyCH4III	ACNGT	8 cut(s)	76, 110, 121, 278, 428, 471, 520, 560
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	8 cut(s)	68, 83, 234, 338, 432, 450, 516, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 657
HpyF3I	CTNAG	2 cut(s)	480, 621
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	177, 516, 690
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	2 cut(s)	245, 496
Lsp1109I	GCAGC	4 cut(s)	52, 95, 115, 118
LweI	GCATC	4 cut(s)	77, 251, 595, 619
MaeI	CTAG	3 cut(s)	380, 435, 579
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	272, 503, 614
MalI	GATC	1 cut(s)	534
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	1 cut(s)	532
MboII	GAAGA	1 cut(s)	270
MhlI	GDGCHC	4 cut(s)	211, 223, 476, 493
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	229, 547
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	8 cut(s)	29, 33, 65, 299, 335, 430, 480, 491
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	2 cut(s)	78, 588
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	5 cut(s)	140, 195, 270, 495, 602
MspR9I	CCNGG	4 cut(s)	141, 495, 602, 654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	335, 657
NciI	CCSGG	3 cut(s)	141, 495, 602
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	3 cut(s)	177, 516, 690
NlaIV	GGNNCC	2 cut(s)	221, 492
NmuCI	GTSAC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	67, 85, 130, 133, 146, 149
PshAI	GACNNNNGTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	221, 492
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	219, 220, 563
RsaI	GTAC	2 cut(s)	35, 640
RsaNI	GTAC	2 cut(s)	34, 639
SaqAI	TTAA	2 cut(s)	78, 588
SatI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	3 cut(s)	219, 220, 563
ScrFI	CCNGG	4 cut(s)	141, 495, 602, 654
SduI	GDGCHC	4 cut(s)	211, 223, 476, 493
SetI	ASST	7 cut(s)	21, 88, 159, 256, 422, 584, 658
SfaNI	GCATC	4 cut(s)	77, 251, 595, 619
SfcI	CTRYAG	2 cut(s)	567, 667
SinI	GGWCC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	229, 547
SsiI	CCGC	5 cut(s)	144, 147, 282, 455, 477
SspMI	CTAG	3 cut(s)	380, 435, 579
StyD4I	CCNGG	4 cut(s)	139, 493, 600, 652
TaaI	ACNGT	8 cut(s)	76, 110, 121, 278, 428, 471, 520, 560
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	229, 547
TatI	WGTACW	2 cut(s)	33, 638
TauI	GCSGC	2 cut(s)	147, 150
Tru1I	TTAA	2 cut(s)	78, 588
Tru9I	TTAA	2 cut(s)	78, 588
TscAI	CASTG	4 cut(s)	124, 345, 476, 523
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	4 cut(s)	65, 83, 128, 131
Tsp45I	GTSAC	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	4 cut(s)	124, 345, 476, 523
VpaK11BI	GGWCC	1 cut(s)	563
XspI	CTAG	3 cut(s)	380, 435, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.