Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

53498798 .. 53499541

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGTCCTTGGCCAATTTCCAAATGCCCCTCATCTTCTTTTTTTTCGTGAGTTCCCTCTTTTTCATCATCTCCTCCAATGCAGCCACTTTCGTAATCCGCAATGAGTGCCCTTACACCGTCTGGGCAGCCGCCTCTCCTGGTGGAGGCCGTCGGCTGGACCGCGGCCAGAGCTGGACACTAAACGTTGCCCCGGGGACGGCCATGGCTCGCATATGGGGGCGTACCAATTGCAAGTTTGATAGTAGTGGCCGCGGCCGTTGTGCCACGGGAGATTGTGGGGCCTTGGAGTGCAAGGGATGGGGAGTCCCTCCCAACACCTTGGCAGAATATGCCCTCAACCAGTTCGGCAACATGGACTTCATTGACATTTCCTTGGTCGATGGCTTCAACATTCCAATGGACTTTAGCCCGACCACCGGCCGGTGTAGGGGAATTCGGTGCACTGCGGACATCAACGGGCAGTGTCCTCGAGAGTTGAGGGTACCTAGTGGGTGCAATAACCCTTGCACTGTTTTTAAGACCAATGAATATTGCTGCACAAATGGGCAGGGGAGCTGTGGACCGACAAATTTCTCAAAATTTTTCAAGACTAGGTGCCCGGATGCTTATAGTTACCCTCAGGATGATCCTACTAGCACATTTACATGCCCTGGTGGGACTAACTATAGGGTTGTGTTTTGCCCCGGAGGAAACCCTGGTAATTTCCCTTTGGAGATGATAACTGATAAGAGTGAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009817 GO:0042742 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

8.13

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 229	3.5e-62	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	2 cut(s)	484, 597
AccII	CGCG	2 cut(s)	165, 255
AciI	CCGC	7 cut(s)	100, 132, 163, 165, 253, 255, 449
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	6 cut(s)	12, 166, 201, 250, 256, 421
AcsI	RAATTY	3 cut(s)	435, 571, 581
AfaI	GTAC	2 cut(s)	226, 486
AfiI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
AgsI	TTSAA	2 cut(s)	391, 589
AjnI	CCWGG	3 cut(s)	139, 652, 697
AluBI	AGCT	2 cut(s)	174, 558
AluI	AGCT	2 cut(s)	174, 558
Alw21I	GWGCWC	1 cut(s)	446
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	2 cut(s)	193, 471
AoxI	GGCC	8 cut(s)	12, 148, 166, 201, 250, 256, 282, 421
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	83, 128, 537
ApoI	RAATTY	3 cut(s)	435, 571, 581
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	160, 282, 563
AsuC2I	CCSGG	4 cut(s)	194, 195, 602, 687
AvaI	CYCGRG	2 cut(s)	193, 471
AvaII	GGWCC	2 cut(s)	160, 563
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	3 cut(s)	113, 446, 602
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	484, 597
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	95, 140, 524
BccI	CCATC	2 cut(s)	294, 377
BceAI	ACGGC	3 cut(s)	135, 216, 243
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	3 cut(s)	141, 654, 699
BcnI	CCSGG	4 cut(s)	194, 195, 602, 687
BfaI	CTAG	3 cut(s)	489, 594, 636
BfmI	CTRYAG	1 cut(s)	667
BisI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
BlsI	GCNGC	7 cut(s)	85, 130, 133, 167, 254, 257, 539
Bme1390I	CCNGG	7 cut(s)	141, 194, 195, 602, 654, 687, 699
Bme18I	GGWCC	2 cut(s)	160, 563
BmeT110I	CYCGRG	2 cut(s)	193, 471
BmgT120I	GGNCC	3 cut(s)	160, 282, 563
BmiI	GGNNCC	3 cut(s)	283, 486, 599
BmrFI	CCNGG	7 cut(s)	141, 194, 195, 602, 654, 687, 699
BmsI	GCATC	1 cut(s)	595
BpuMI	CCSGG	4 cut(s)	194, 195, 602, 687
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
Bse118I	RCCGGY	2 cut(s)	419, 423
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	141, 654, 699
BseGI	GGATG	3 cut(s)	305, 610, 631
BseLI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	3 cut(s)	113, 446, 602
BseX3I	CGGCCG	2 cut(s)	256, 421
BseXI	GCAGC	3 cut(s)	95, 140, 524
BsgI	GTGCAG	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	165, 255
Bsh1285I	CGRYCG	2 cut(s)	259, 424
BshFI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BshNI	GGYRCC	2 cut(s)	484, 597
BsiEI	CGRYCG	2 cut(s)	259, 424
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	2 cut(s)	193, 471
BsiSI	CCGG	5 cut(s)	194, 420, 424, 602, 687
BslFI	GGGAC	3 cut(s)	211, 293, 673
BslI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
BsmFI	GGGAC	3 cut(s)	211, 293, 673
BsnI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BsoBI	CYCGRG	2 cut(s)	193, 471
Bsp1286I	GDGCHC	3 cut(s)	113, 446, 602
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	7 cut(s)	100, 132, 163, 165, 253, 255, 449
BspANI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	2 cut(s)	165, 255
BspLI	GGNNCC	3 cut(s)	283, 486, 599
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	2 cut(s)	484, 597
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	2 cut(s)	419, 423
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	2 cut(s)	419, 423
BssMI	GATC	1 cut(s)	628
BssT1I	CCWWGG	5 cut(s)	9, 204, 285, 321, 375
Bst2UI	CCWGG	3 cut(s)	141, 654, 699
Bst4CI	ACNGT	2 cut(s)	121, 514
BstAPI	GCANNNNNTGC	2 cut(s)	108, 332
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	4 cut(s)	163, 204, 253, 267
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	305, 610, 631
BstFNI	CGCG	2 cut(s)	165, 255
BstKTI	GATC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	628
BstMCI	CGRYCG	2 cut(s)	259, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 171, 332
BstNI	CCWGG	3 cut(s)	141, 654, 699
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	7 cut(s)	139, 192, 193, 600, 652, 685, 697
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	3 cut(s)	113, 446, 602
BstUI	CGCG	2 cut(s)	165, 255
BstV1I	GCAGC	3 cut(s)	95, 140, 524
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstZI	CGGCCG	2 cut(s)	256, 421
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BtgI	CCRYGG	4 cut(s)	163, 204, 253, 267
BtsCI	GGATG	3 cut(s)	305, 610, 631
BtsI	GCAGTG	2 cut(s)	444, 470
BtsIMutI	CAGTG	3 cut(s)	444, 470, 510
Cac8I	GCNNGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	419, 423
Cfr13I	GGNCC	3 cut(s)	160, 282, 563
Cfr42I	CCGCGG	2 cut(s)	166, 256
Cfr9I	CCCGGG	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	225, 485
CviAII	CATG	3 cut(s)	205, 355, 648
CviQI	GTAC	2 cut(s)	225, 485
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
EaeI	YGGCCR	6 cut(s)	12, 166, 201, 250, 256, 421
EagI	CGGCCG	2 cut(s)	256, 421
EclXI	CGGCCG	2 cut(s)	256, 421
Eco130I	CCWWGG	5 cut(s)	9, 204, 285, 321, 375
Eco47I	GGWCC	2 cut(s)	160, 563
Eco52I	CGGCCG	2 cut(s)	256, 421
Eco81I	CCTNAGG	1 cut(s)	621
Eco88I	CYCGRG	2 cut(s)	193, 471
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	139, 652, 697
EcoT14I	CCWWGG	5 cut(s)	9, 204, 285, 321, 375
ErhI	CCWWGG	5 cut(s)	9, 204, 285, 321, 375
FaeI	CATG	3 cut(s)	208, 358, 651
FaiI	YATR	8 cut(s)	206, 215, 217, 333, 356, 612, 649, 669
FaqI	GGGAC	3 cut(s)	211, 293, 673
FatI	CATG	3 cut(s)	204, 354, 647
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
FokI	GGATG	3 cut(s)	312, 617, 638
Fsp4HI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
FspBI	CTAG	3 cut(s)	489, 594, 636
GluI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
HaeIII	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
HapII	CCGG	5 cut(s)	194, 420, 424, 602, 687
Hin1II	CATG	3 cut(s)	208, 358, 651
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	5 cut(s)	194, 420, 424, 602, 687
Hpy166II	GTNNAC	2 cut(s)	444, 563
Hpy188III	TCNNGA	4 cut(s)	49, 473, 589, 623
Hpy8I	GTNNAC	2 cut(s)	444, 563
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	121, 514
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	83, 234, 294, 444, 498, 510, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 171, 332
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	208, 358, 651
KpnI	GGTACC	1 cut(s)	488
KspI	CCGCGG	2 cut(s)	166, 256
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	3 cut(s)	95, 140, 524
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	489, 594, 636
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	3 cut(s)	113, 446, 602
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	6 cut(s)	16, 229, 435, 571, 581, 703
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	315
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	398, 646
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	165, 255
MspI	CCGG	5 cut(s)	194, 420, 424, 602, 687
MspR9I	CCNGG	7 cut(s)	141, 194, 195, 602, 654, 687, 699
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	141, 654, 699
MvnI	CGCG	2 cut(s)	165, 255
MwoI	GCNNNNNNNGC	3 cut(s)	108, 171, 332
NciI	CCSGG	4 cut(s)	194, 195, 602, 687
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	3 cut(s)	208, 358, 651
NlaIV	GGNNCC	3 cut(s)	283, 486, 599
NspI	RCATGY	1 cut(s)	651
PaeR7I	CTCGAG	1 cut(s)	471
PkrI	GCNGC	7 cut(s)	85, 130, 133, 167, 254, 257, 539
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	3 cut(s)	139, 652, 697
PspGI	CCWGG	3 cut(s)	139, 652, 697
PspN4I	GGNNCC	3 cut(s)	283, 486, 599
PspPI	GGNCC	3 cut(s)	160, 282, 563
RsaI	GTAC	2 cut(s)	226, 486
RsaNI	GTAC	2 cut(s)	225, 485
RseI	CAYNNNNRTG	2 cut(s)	398, 646
SacII	CCGCGG	2 cut(s)	166, 256
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	3 cut(s)	160, 282, 563
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	7 cut(s)	141, 194, 195, 602, 654, 687, 699
SduI	GDGCHC	3 cut(s)	113, 446, 602
SetI	ASST	6 cut(s)	176, 189, 323, 490, 560, 599
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	667
Sfr274I	CTCGAG	1 cut(s)	471
Sfr303I	CCGCGG	2 cut(s)	166, 256
SgrBI	CCGCGG	2 cut(s)	166, 256
SinI	GGWCC	2 cut(s)	160, 563
SlaI	CTCGAG	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	398, 646
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	6 cut(s)	16, 229, 435, 571, 581, 703
SsiI	CCGC	7 cut(s)	100, 132, 163, 165, 253, 255, 449
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	3 cut(s)	489, 594, 636
StyD4I	CCNGG	7 cut(s)	139, 192, 193, 600, 652, 685, 697
StyI	CCWWGG	5 cut(s)	9, 204, 285, 321, 375
TaaI	ACNGT	2 cut(s)	121, 514
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	381, 472
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	6 cut(s)	16, 229, 435, 571, 581, 703
TauI	GCSGC	4 cut(s)	134, 168, 255, 258
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	451, 470, 517
TseI	GCWGC	3 cut(s)	83, 128, 537
TspDTI	ATGAA	4 cut(s)	17, 55, 352, 543
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	3 cut(s)	451, 470, 517
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	160, 563
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	435, 571, 581
XceI	RCATGY	1 cut(s)	651
XhoI	CTCGAG	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	3 cut(s)	489, 594, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.