Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5577512 .. 5578201

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGCCTTCTCAAAAACCTCCCTACTGTTTTGTCCATCCAGTGGATGGTTACCCTCTACTTTGCTGCATCAACCGTTAATGCAGCGACCTTCAATATCAAAAACAACTGCCCCTTCACTGTTTGGGCTGGCGCAGTGCCAGGCGGTGGCACACGACTTGGCACCGGCGAAACATGGACGCTAAATGTGCCAGCCGGAACTAGAGGAGCTCGCATTTGGCCCCGAACAAACTGCAACTTTGATGGAGCCGGACGTGGAAGATGCCAAACCGGTGACTGCGGCGGTCATCTCCAGTGTCAAGGCTATGGCCAGCCCCCAAACACCCTCGCCGAATATGCACTTAACCAATACATGAACTTGGATTTCTTTGATATCTCTCTGGTTGATGGCTTCAATGTCCCGATGGACTTTAGTCCTATCTCGAACGGCTGCACTAGGGGTATCAGATGCACCGCCGATATCAATGGACAGTGCCCGGCGCAGTTGAGGGCTCCCGGAGGATGTAACAATCCGTGCACTGTGTTCAAAACCGATCAGTATTGCTGTAATTCTGGTAACTGTGGTCCTACAGACTACTCTAGGTTTTTCAAAACTCGATGCTCCGGTGCTTATAGTTACCCTAAGGATGATGCAACCAGCACATTTACTTGTCCTGGTGGTACCAACTATAGAGTTGTGTTCTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

230

Amino Acids

24.69

Weight (kDa)

8.32

Isoelectric Point (pI)

23.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 229	1.3e-61	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	161, 659
AccB7I	CCANNNNNTGG	3 cut(s)	42, 46, 146
AciI	CCGC	4 cut(s)	144, 279, 282, 453
AcoI	YGGCCR	1 cut(s)	307
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	42, 46, 146
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	94, 394, 526, 589
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	139, 652
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	2 cut(s)	211, 518
Alw44I	GTGCAC	1 cut(s)	514
AoxI	GGCC	2 cut(s)	218, 307
ApaLI	GTGCAC	1 cut(s)	514
ApeKI	GCWGC	3 cut(s)	65, 83, 429
AsiGI	ACCGGT	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	134, 481
AspS9I	GGNCC	2 cut(s)	219, 563
AsuC2I	CCSGG	2 cut(s)	476, 495
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	563
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	2 cut(s)	476, 518
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	2 cut(s)	161, 659
BanII	GRGCYC	2 cut(s)	211, 493
Bbv12I	GWGCWC	2 cut(s)	211, 518
BbvI	GCAGC	3 cut(s)	52, 95, 416
BccI	CCATC	5 cut(s)	40, 44, 236, 380, 397
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	2 cut(s)	141, 654
BcnI	CCSGG	2 cut(s)	476, 495
BfaI	CTAG	3 cut(s)	201, 435, 579
BfmI	CTRYAG	2 cut(s)	567, 667
BisI	GCNGC	4 cut(s)	66, 84, 280, 430
BlsI	GCNGC	4 cut(s)	67, 85, 281, 431
Bme1390I	CCNGG	4 cut(s)	141, 476, 495, 654
Bme18I	GGWCC	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	219, 563
BmiI	GGNNCC	5 cut(s)	163, 221, 247, 492, 661
BmrFI	CCNGG	4 cut(s)	141, 476, 495, 654
BmsI	GCATC	5 cut(s)	77, 251, 437, 587, 619
BoxI	GACNNNNGTC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	476, 495
BsaWI	WCCGGW	2 cut(s)	269, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 46, 146
Bse118I	RCCGGY	2 cut(s)	164, 269
Bse1I	ACTGG	2 cut(s)	40, 292
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	141, 654
BseGI	GGATG	4 cut(s)	36, 51, 506, 631
BseLI	CCNNNNNNNGG	3 cut(s)	42, 46, 146
BseNI	ACTGG	2 cut(s)	40, 292
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	2 cut(s)	476, 518
BseXI	GCAGC	3 cut(s)	52, 95, 416
BsgI	GTGCAG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	220, 309
BshNI	GGYRCC	2 cut(s)	161, 659
BshTI	ACCGGT	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	211, 518
BsiSI	CCGG	7 cut(s)	165, 195, 249, 270, 476, 495, 603
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	42, 46, 146
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	220, 309
Bsp1286I	GDGCHC	4 cut(s)	211, 476, 493, 518
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	4 cut(s)	144, 279, 282, 453
BspANI	GGCC	2 cut(s)	220, 309
BspLI	GGNNCC	5 cut(s)	163, 221, 247, 492, 661
BspT107I	GGYRCC	2 cut(s)	161, 659
BsrFI	RCCGGY	2 cut(s)	164, 269
BsrI	ACTGG	2 cut(s)	40, 292
BssAI	RCCGGY	2 cut(s)	164, 269
BssMI	GATC	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	141, 654
Bst4CI	ACNGT	6 cut(s)	28, 76, 121, 471, 520, 560
BstC8I	GCNNGC	4 cut(s)	130, 192, 211, 311
BstDEI	CTNAG	1 cut(s)	621
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	36, 51, 506, 631
BstHHI	GCGC	2 cut(s)	134, 481
BstKTI	GATC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 335
BstNI	CCWGG	2 cut(s)	141, 654
BstPAI	GACNNNNGTC	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	4 cut(s)	139, 474, 493, 652
BstSFI	CTRYAG	2 cut(s)	567, 667
BstSLI	GKGCMC	2 cut(s)	476, 518
BstV1I	GCAGC	3 cut(s)	52, 95, 416
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	220, 309
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	36, 51, 506, 631
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	6 cut(s)	47, 117, 141, 299, 476, 516
Cac8I	GCNNGC	4 cut(s)	130, 192, 211, 311
CfoI	GCGC	2 cut(s)	134, 481
Cfr10I	RCCGGY	2 cut(s)	164, 269
Cfr13I	GGNCC	2 cut(s)	219, 563
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	660
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	2 cut(s)	174, 352
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	2 cut(s)	211, 493
Eco32I	GATATC	2 cut(s)	373, 460
Eco47I	GGWCC	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	621
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	139, 652
EcoRV	GATATC	2 cut(s)	373, 460
EcoT38I	GRGCYC	2 cut(s)	211, 493
FaeI	CATG	2 cut(s)	177, 355
FaiI	YATR	6 cut(s)	175, 306, 336, 353, 612, 669
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	173, 351
Fnu4HI	GCNGC	4 cut(s)	66, 84, 280, 430
FokI	GGATG	4 cut(s)	23, 58, 513, 638
FriOI	GRGCYC	2 cut(s)	211, 493
Fsp4HI	GCNGC	4 cut(s)	66, 84, 280, 430
FspBI	CTAG	3 cut(s)	201, 435, 579
GlaI	GCGC	2 cut(s)	133, 480
GluI	GCNGC	4 cut(s)	66, 84, 280, 430
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	220, 309
HapII	CCGG	7 cut(s)	165, 195, 249, 270, 476, 495, 603
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	134, 481
Hin1II	CATG	2 cut(s)	177, 355
Hin6I	GCGC	2 cut(s)	132, 479
HinP1I	GCGC	2 cut(s)	132, 479
HpaII	CCGG	7 cut(s)	165, 195, 249, 270, 476, 495, 603
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	2 cut(s)	400, 421
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	3 cut(s)	17, 100, 124
HpyCH4III	ACNGT	6 cut(s)	28, 76, 121, 471, 520, 560
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	8 cut(s)	68, 83, 234, 338, 432, 450, 516, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 335
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	177, 355
HspAI	GCGC	2 cut(s)	132, 479
KpnI	GGTACC	1 cut(s)	663
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	4 cut(s)	206, 245, 496, 605
Lsp1109I	GCAGC	3 cut(s)	52, 95, 416
LweI	GCATC	5 cut(s)	77, 251, 437, 587, 619
MaeI	CTAG	3 cut(s)	201, 435, 579
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	5 cut(s)	49, 272, 503, 554, 614
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	1 cut(s)	270
MhlI	GDGCHC	4 cut(s)	211, 476, 493, 518
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	1 cut(s)	547
MluNI	TGGCCA	1 cut(s)	309
MnlI	CCTC	6 cut(s)	29, 65, 197, 335, 480, 491
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	2 cut(s)	78, 342
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	7 cut(s)	165, 195, 249, 270, 476, 495, 603
MspR9I	CCNGG	4 cut(s)	141, 476, 495, 654
MvaI	CCWGG	2 cut(s)	141, 654
MwoI	GCNNNNNNNGC	2 cut(s)	187, 335
NciI	CCSGG	2 cut(s)	476, 495
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	2 cut(s)	177, 355
NlaIV	GGNNCC	5 cut(s)	163, 221, 247, 492, 661
NmuCI	GTSAC	1 cut(s)	272
PflMI	CCANNNNNTGG	3 cut(s)	42, 46, 146
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	67, 85, 281, 431
PshAI	GACNNNNGTC	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	139, 652
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	2 cut(s)	139, 652
PspN4I	GGNNCC	5 cut(s)	163, 221, 247, 492, 661
PspPI	GGNCC	2 cut(s)	219, 563
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	78, 342
SatI	GCNGC	4 cut(s)	66, 84, 280, 430
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	2 cut(s)	219, 563
ScrFI	CCNGG	4 cut(s)	141, 476, 495, 654
SduI	GDGCHC	4 cut(s)	211, 476, 493, 518
SetI	ASST	5 cut(s)	21, 92, 211, 256, 584
SfaNI	GCATC	5 cut(s)	77, 251, 437, 587, 619
SfcI	CTRYAG	2 cut(s)	567, 667
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	4 cut(s)	144, 279, 282, 453
SspMI	CTAG	3 cut(s)	201, 435, 579
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	4 cut(s)	139, 474, 493, 652
TaaI	ACNGT	6 cut(s)	28, 76, 121, 471, 520, 560
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	422, 595
TasI	AATT	1 cut(s)	547
TauI	GCSGC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	78, 342
Tru9I	TTAA	2 cut(s)	78, 342
TscAI	CASTG	6 cut(s)	47, 124, 141, 299, 476, 523
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	65, 83, 429
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	6 cut(s)	47, 124, 141, 299, 476, 523
Van91I	CCANNNNNTGG	3 cut(s)	42, 46, 146
VneI	GTGCAC	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	3 cut(s)	201, 435, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.