Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

55244087 .. 55244404

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAACATGGATTTTATTGGTATCTCTTTGGGTGAGGGGTTCAATGTCCCAATAGACTTTAGTTCCACCTCCAATGGCTGCACTAGAGATATCAACTACACAACAGATATAAACAGACAGTGCCCCACGCAGTTGAGGGCTCCGGGTGGATGTAACAATCCATGCACTGTGTTCAAAACTGATCAGTATTGTTGTAATTCTGGAAACTGTGGCCCTATCGACTACTCTATGTTTTTTAAAAGTCGCTGCCCGAATGCTTATAGTTACCCTAAGGATGATCTAACCAGCCTTTTTATTTGCCCTGGTTGCATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

4.98

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	3 - 101	2.1e-24	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	43, 175
AjnI	CCWGG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	78, 246
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	65, 233
BciT130I	CCWGG	1 cut(s)	303
BclI	TGATCA	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	79, 247
BlsI	GCNGC	2 cut(s)	80, 248
Bme1390I	CCNGG	2 cut(s)	144, 303
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	144, 303
BpuMI	CCSGG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	2 cut(s)	155, 280
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	65, 233
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	125, 142
Bsp143I	GATC	2 cut(s)	181, 277
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	181, 277
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	120, 169, 209
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	155, 280
BstKTI	GATC	2 cut(s)	184, 280
BstMBI	GATC	2 cut(s)	181, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	142, 301
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	65, 233
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	155, 280
BtsIMutI	CAGTG	2 cut(s)	125, 165
Cac8I	GCNNGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	3 cut(s)	7, 162, 310
CviJI	RGCY	4 cut(s)	78, 140, 213, 288
CviKI_1	RGCY	4 cut(s)	78, 140, 213, 288
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	183, 279
DpnII	GATC	2 cut(s)	181, 277
DraI	TTTAAA	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	3 cut(s)	10, 165, 313
FaiI	YATR	6 cut(s)	8, 110, 163, 230, 261, 311
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	6, 161, 309
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	79, 247
FokI	GGATG	2 cut(s)	162, 287
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	79, 247
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	79, 247
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	3 cut(s)	10, 165, 313
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	201
HpyCH4III	ACNGT	3 cut(s)	120, 169, 209
HpyCH4V	TGCA	4 cut(s)	81, 165, 309, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	10, 165, 313
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	181, 277
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	156, 186, 288, 298
Lsp1109I	GCAGC	2 cut(s)	65, 233
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	152, 263
MalI	GATC	2 cut(s)	183, 279
MboI	GATC	2 cut(s)	181, 277
MhlI	GDGCHC	2 cut(s)	125, 142
MluCI	AATT	1 cut(s)	196
MnlI	CCTC	3 cut(s)	28, 79, 129
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	144, 303
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	181, 277
NlaIII	CATG	3 cut(s)	10, 165, 313
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	80, 248
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	79, 247
Sau3AI	GATC	2 cut(s)	181, 277
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	144, 303
SduI	GDGCHC	2 cut(s)	125, 142
SetI	ASST	1 cut(s)	71
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	142, 301
TaaI	ACNGT	3 cut(s)	120, 169, 209
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	125, 172
TseI	GCWGC	2 cut(s)	78, 246
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	125, 172
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.