gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| gag_pre-integrs | PF13976 | 17 - 80 | 2.2e-11 | GAG-pre-integrase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 206 |
| AgsI | TTSAA | 3 cut(s) | 65, 164, 186 |
| Alw26I | GTCTC | 1 cut(s) | 124 |
| AoxI | GGCC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BccI | CCATC | 1 cut(s) | 159 |
| BcnI | CCSGG | 1 cut(s) | 16 |
| BcoDI | GTCTC | 1 cut(s) | 124 |
| Bme1390I | CCNGG | 1 cut(s) | 16 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmrFI | CCNGG | 1 cut(s) | 16 |
| BmsI | GCATC | 2 cut(s) | 12, 97 |
| BpuMI | CCSGG | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 1 cut(s) | 31 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 102, 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 206 |
| Bse1I | ACTGG | 1 cut(s) | 200 |
| BseDI | CCNNGG | 1 cut(s) | 31 |
| BseGI | GGATG | 3 cut(s) | 24, 88, 151 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 1 cut(s) | 200 |
| BshFI | GGCC | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BsmAI | GTCTC | 1 cut(s) | 124 |
| BsmI | GAATGC | 1 cut(s) | 101 |
| BsnI | GGCC | 1 cut(s) | 150 |
| BspANI | GGCC | 1 cut(s) | 150 |
| BspCNI | CTCAG | 1 cut(s) | 134 |
| BsrI | ACTGG | 1 cut(s) | 200 |
| BssECI | CCNNGG | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| BstDEI | CTNAG | 1 cut(s) | 121 |
| BstF5I | GGATG | 3 cut(s) | 24, 88, 151 |
| BstMAI | GTCTC | 1 cut(s) | 124 |
| BstSCI | CCNGG | 1 cut(s) | 14 |
| BsuRI | GGCC | 1 cut(s) | 150 |
| BtsCI | GGATG | 3 cut(s) | 24, 88, 151 |
| BtsI | GCAGTG | 1 cut(s) | 79 |
| BtsIMutI | CAGTG | 1 cut(s) | 79 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CviAII | CATG | 3 cut(s) | 116, 206, 237 |
| CviJI | RGCY | 2 cut(s) | 51, 150 |
| CviKI_1 | RGCY | 2 cut(s) | 51, 150 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DdeI | CTNAG | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| FaeI | CATG | 3 cut(s) | 119, 209, 240 |
| FaiI | YATR | 5 cut(s) | 55, 117, 207, 238, 244 |
| FatI | CATG | 3 cut(s) | 115, 205, 236 |
| FokI | GGATG | 3 cut(s) | 31, 75, 138 |
| HaeIII | GGCC | 1 cut(s) | 150 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 3 cut(s) | 119, 209, 240 |
| HinfI | GANTC | 1 cut(s) | 233 |
| HpaII | CCGG | 1 cut(s) | 16 |
| Hpy188III | TCNNGA | 1 cut(s) | 10 |
| HpyAV | CCTTC | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 1 cut(s) | 101 |
| HpyF3I | CTNAG | 1 cut(s) | 121 |
| Hsp92II | CATG | 3 cut(s) | 119, 209, 240 |
| LpnPI | CCDG | 3 cut(s) | 29, 168, 213 |
| LweI | GCATC | 2 cut(s) | 12, 97 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| MnlI | CCTC | 2 cut(s) | 17, 30 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 1 cut(s) | 16 |
| Mva1269I | GAATGC | 1 cut(s) | 101 |
| NciI | CCSGG | 1 cut(s) | 16 |
| NlaIII | CATG | 3 cut(s) | 119, 209, 240 |
| PctI | GAATGC | 1 cut(s) | 101 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 242 |
| ScrFI | CCNGG | 1 cut(s) | 16 |
| SetI | ASST | 3 cut(s) | 9, 41, 60 |
| SfaNI | GCATC | 2 cut(s) | 12, 97 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 14 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TatI | WGTACW | 1 cut(s) | 124 |
| TscAI | CASTG | 1 cut(s) | 79 |
| TspDTI | ATGAA | 2 cut(s) | 104, 194 |
| TspRI | CASTG | 1 cut(s) | 79 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |