Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5652400 .. 5653077

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGCCTCCTTAAAAGCCTCTTAATTTTCTCCATCCTATGTGCCATTCTCTTCTTTGCATCAACCAATGCAGCTCGATTTGACATCCAAAACAACTGTGCCTACACTGTATGGGCAGCTGCTGTGCCAGGCGGTGGCCGCCAGCTCGGCAAAGGCCAATCCTGGGCCTTAGATGTGAGTGCCGGACGTGGCAACTGCCAAACAGGTGATTGTGGGGGTGTCCTCCAATGCCAAGGCTATGGTCAACCACCAAACACCCTAGCTGAATATGCCCTTAATCAATTTAACAACTTAGATTTCTTTGACATCTCTCTTGTTGATGGGTTTAATGTACCTATGGACTTTAGTCCCACGTCTAGTGGGTGCACTAGGGGGATTAGGTGCACAGCTGATATTAATGGGCAGTGTCCTAACCAACTGAGGGCTCCAGGAGGGTGCAACAACCCTTGCACTGTGTTCAAGACTGATCAATATTGTTGCAATTCTGGAAATTGTGGCCCCACAGACTTCTCTAAGTTTTTTAAGAGTGGATGCCCGGATGCTTATAGTTATCCTAAGGATGACCAAACCAGTACATTTACATGTCCTGGTGGAACTAACTACAAGGTTGTCTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

208

Amino Acids

22.11

Weight (kDa)

5.21

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	2 cut(s)	132, 139
AcoI	YGGCCR	1 cut(s)	136
AfaI	GTAC	2 cut(s)	333, 574
AfiI	CCNNNNNNNGG	3 cut(s)	134, 163, 421
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	1 cut(s)	460
AjiI	CACGTC	2 cut(s)	188, 354
AjnI	CCWGG	4 cut(s)	127, 161, 427, 586
AluBI	AGCT	5 cut(s)	74, 119, 145, 263, 389
AluI	AGCT	5 cut(s)	74, 119, 145, 263, 389
Alw21I	GWGCWC	2 cut(s)	368, 386
Alw44I	GTGCAC	2 cut(s)	364, 382
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	4 cut(s)	136, 154, 165, 496
ApaLI	GTGCAC	2 cut(s)	364, 382
ApeKI	GCWGC	3 cut(s)	71, 116, 119
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	165, 497
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	2 cut(s)	368, 386
BanII	GRGCYC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	2 cut(s)	368, 386
BbvI	GCAGC	3 cut(s)	83, 106, 128
BccI	CCATC	2 cut(s)	41, 314
BciT130I	CCWGG	4 cut(s)	129, 163, 429, 588
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	536
BfaI	CTAG	3 cut(s)	260, 357, 369
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	72, 117, 120, 139
BlsI	GCNGC	4 cut(s)	73, 118, 121, 140
Bme1390I	CCNGG	5 cut(s)	129, 163, 429, 536, 588
BmgBI	CACGTC	2 cut(s)	188, 354
BmgT120I	GGNCC	2 cut(s)	165, 497
BmiI	GGNNCC	2 cut(s)	426, 499
BmrFI	CCNGG	5 cut(s)	129, 163, 429, 536, 588
BmsI	GCATC	3 cut(s)	68, 521, 529
BoxI	GACNNNNGTC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	162, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 163, 421
Bse1I	ACTGG	1 cut(s)	570
Bse21I	CCTNAGG	1 cut(s)	555
BseBI	CCWGG	4 cut(s)	129, 163, 429, 588
BseDI	CCNNGG	2 cut(s)	162, 232
BseGI	GGATG	5 cut(s)	33, 84, 536, 544, 565
BseLI	CCNNNNNNNGG	3 cut(s)	134, 163, 421
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	570
BseSI	GKGCMC	2 cut(s)	368, 386
BseXI	GCAGC	3 cut(s)	83, 106, 128
BshFI	GGCC	4 cut(s)	138, 156, 167, 498
BsiHKAI	GWGCWC	2 cut(s)	368, 386
BsiSI	CCGG	2 cut(s)	183, 536
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	134, 163, 421
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	138, 156, 167, 498
Bsp1286I	GDGCHC	3 cut(s)	368, 386, 427
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	132, 139
BspANI	GGCC	4 cut(s)	138, 156, 167, 498
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	426, 499
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	162, 232
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	4 cut(s)	129, 163, 429, 588
Bst4CI	ACNGT	3 cut(s)	98, 109, 454
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	5 cut(s)	169, 292, 419, 513, 555
BstF5I	GGATG	5 cut(s)	33, 84, 536, 544, 565
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 147, 269
BstNI	CCWGG	4 cut(s)	129, 163, 429, 588
BstNSI	RCATGY	1 cut(s)	585
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	5 cut(s)	127, 161, 427, 534, 586
BstSLI	GKGCMC	2 cut(s)	368, 386
BstV1I	GCAGC	3 cut(s)	83, 106, 128
BstV2I	GAAGAC	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	138, 156, 167, 498
BtrI	CACGTC	2 cut(s)	188, 354
BtsCI	GGATG	5 cut(s)	33, 84, 536, 544, 565
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	105, 410, 450
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	165, 497
Csp6I	GTAC	2 cut(s)	332, 573
CviAII	CATG	2 cut(s)	582, 621
CviQI	GTAC	2 cut(s)	332, 573
DdeI	CTNAG	5 cut(s)	169, 292, 419, 513, 555
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	555
EcoRII	CCWGG	4 cut(s)	127, 161, 427, 586
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	585, 624
FaiI	YATR	8 cut(s)	40, 112, 240, 270, 338, 546, 583, 622
FalI	AAGNNNNNCTT	1 cut(s)	596
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	2 cut(s)	581, 620
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	72, 117, 120, 139
FokI	GGATG	5 cut(s)	20, 71, 543, 551, 572
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	72, 117, 120, 139
FspBI	CTAG	3 cut(s)	260, 357, 369
GluI	GCNGC	4 cut(s)	72, 117, 120, 139
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	138, 156, 167, 498
HapII	CCGG	2 cut(s)	183, 536
Hin1II	CATG	2 cut(s)	585, 624
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	183, 536
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	245, 366, 384
Hpy188III	TCNNGA	2 cut(s)	460, 486
Hpy8I	GTNNAC	3 cut(s)	245, 366, 384
HpyCH4III	ACNGT	3 cut(s)	98, 109, 454
HpyCH4IV	ACGT	2 cut(s)	187, 353
HpyCH4V	TGCA	7 cut(s)	59, 71, 366, 384, 438, 450, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 147, 269
HpyF3I	CTNAG	5 cut(s)	169, 292, 419, 513, 555
HpySE526I	ACGT	2 cut(s)	187, 353
Hsp92II	CATG	2 cut(s)	585, 624
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	83, 106, 128
LweI	GCATC	3 cut(s)	68, 521, 529
MaeI	CTAG	3 cut(s)	260, 357, 369
MaeII	ACGT	2 cut(s)	187, 353
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	2 cut(s)	43, 604
MhlI	GDGCHC	3 cut(s)	368, 386, 427
MluCI	AATT	4 cut(s)	24, 281, 481, 490
MnlI	CCTC	5 cut(s)	17, 29, 233, 414, 425
MseI	TTAA	7 cut(s)	12, 23, 276, 285, 327, 396, 522
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	2 cut(s)	119, 389
MspI	CCGG	2 cut(s)	183, 536
MspR9I	CCNGG	5 cut(s)	129, 163, 429, 536, 588
MvaI	CCWGG	4 cut(s)	129, 163, 429, 588
MwoI	GCNNNNNNNGC	3 cut(s)	138, 147, 269
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	2 cut(s)	585, 624
NlaIV	GGNNCC	2 cut(s)	426, 499
NmeAIII	GCCGAG	1 cut(s)	126
NspI	RCATGY	1 cut(s)	585
PciI	ACATGT	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	73, 118, 121, 140
PscI	ACATGT	1 cut(s)	581
PshAI	GACNNNNGTC	1 cut(s)	345
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	4 cut(s)	127, 161, 427, 586
PspGI	CCWGG	4 cut(s)	127, 161, 427, 586
PspN4I	GGNNCC	2 cut(s)	426, 499
PspPI	GGNCC	2 cut(s)	165, 497
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	119, 389
RsaI	GTAC	2 cut(s)	333, 574
RsaNI	GTAC	2 cut(s)	332, 573
RseI	CAYNNNNRTG	1 cut(s)	580
SaqAI	TTAA	7 cut(s)	12, 23, 276, 285, 327, 396, 522
SatI	GCNGC	4 cut(s)	72, 117, 120, 139
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	165, 497
ScrFI	CCNGG	5 cut(s)	129, 163, 429, 536, 588
SduI	GDGCHC	3 cut(s)	368, 386, 427
SfaNI	GCATC	3 cut(s)	68, 521, 529
SmiMI	CAYNNNNRTG	1 cut(s)	580
Sse9I	AATT	4 cut(s)	24, 281, 481, 490
SsiI	CCGC	2 cut(s)	132, 139
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	3 cut(s)	260, 357, 369
StyD4I	CCNGG	5 cut(s)	127, 161, 427, 534, 586
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	98, 109, 454
TaiI	ACGT	2 cut(s)	190, 356
TaqI	TCGA	1 cut(s)	76
TasI	AATT	4 cut(s)	24, 281, 481, 490
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	1 cut(s)	141
Tru1I	TTAA	7 cut(s)	12, 23, 276, 285, 327, 396, 522
Tru9I	TTAA	7 cut(s)	12, 23, 276, 285, 327, 396, 522
TscAI	CASTG	3 cut(s)	112, 410, 457
TseI	GCWGC	3 cut(s)	71, 116, 119
TspRI	CASTG	3 cut(s)	112, 410, 457
Van91I	CCANNNNNTGG	1 cut(s)	134
VneI	GTGCAC	2 cut(s)	364, 382
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	585
XspI	CTAG	3 cut(s)	260, 357, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.