Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

1151365 .. 1152637

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCGAATTTGTTTGCATGCTTGTGTCTTGTATTGTTATGCCCAATAGCTTATTTTGCTACCCTATATAAACTCATCAAATTCCTCAGAATTCAAGACACAATCACACATCGAAACCAATATTTTCACAAAATGAGCATCCACAAAAGCTTCTCAGTTTTGTCCATCCTATGGATCACCGCCCTTTGCTTTGCTCCATCAACCATCAGTGCAGCACGATTCGATATCCGAAACAACTGCCCCTTCCCTGTCTGGGCCGCCGCAGTGCCAGGCGGCGGCAGACAGCTTAACCAGGGAGAATCTTGGCCCCTAGACGTGAATGCGGGCACTACAGGTGGTCGCGTGTGGGCACGAACCGGATGCAACTTTGATGCTTCCGGACATGGCAGCTGTCAGACCGGTGACTGCGGCGGCCTCCTTGAGTGCCAAGCCTACGGTCAACCACCAAACACCCTAGCCGAATACGGGCTTAACCAGTTCAACAATTTGGATTTCATCGACATCTCTCTCGTTGACGGGTTCAATGTGGCTATGGACTTTAGTCCTACTTCTCCTTGCGACCGTGGGATTCAGTGCACGGCGGATATCAACGGGCAGTGCCCTAATGAGCTGAAAGCCCCGGGTGGCTGTAACAATCCCTGTACCGTGTACAAGACTGATGAGTACTGCTGCAATTCTGGGAGCTGTGGACCCACGGCTTTGTCTATGTTTTTCAAGGAGCGGTGCCCGGATGCTTACAGTTACCCTAAGGACGATACAACCAGCACTGTGGTTTTTACTTGCCCCGGCGGGACTAACTATAGGGTTGTGTTCTGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

274

Amino Acids

29.72

Weight (kDa)

5.76

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	78 - 273	2.9e-58	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	721
AccII	CGCG	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	377
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	3 cut(s)	7, 80, 90
AfaI	GTAC	3 cut(s)	643, 650, 665
AfiI	CCNNNNNNNGG	4 cut(s)	171, 253, 275, 465
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	95, 481, 523, 715
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	268, 291
AluBI	AGCT	6 cut(s)	50, 150, 286, 390, 610, 684
AluI	AGCT	6 cut(s)	50, 150, 286, 390, 610, 684
Alw21I	GWGCWC	1 cut(s)	578
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	619
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	3 cut(s)	255, 305, 412
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	212, 387, 669
ApoI	RAATTY	3 cut(s)	7, 80, 90
AsiGI	ACCGGT	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	255, 306, 689
AsuC2I	CCSGG	4 cut(s)	620, 621, 728, 786
AsuHPI	GGTGA	2 cut(s)	169, 413
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	747
BaeGI	GKGCMC	5 cut(s)	329, 352, 578, 602, 728
BanI	GGYRCC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	224, 399, 656
BccI	CCATC	3 cut(s)	173, 205, 212
BceAI	ACGGC	2 cut(s)	594, 711
BcgI	CGANNNNNNTGC	4 cut(s)	219, 253, 342, 376
BciT130I	CCWGG	2 cut(s)	270, 293
BcnI	CCSGG	4 cut(s)	620, 621, 728, 786
BfaI	CTAG	2 cut(s)	311, 455
BfmI	CTRYAG	2 cut(s)	330, 799
BisI	GCNGC	9 cut(s)	213, 258, 261, 274, 277, 388, 409, 412, 670
BlsI	GCNGC	9 cut(s)	214, 259, 262, 275, 278, 389, 410, 413, 671
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	6 cut(s)	270, 293, 620, 621, 728, 786
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	619
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	255, 306, 689
BmiI	GGNNCC	3 cut(s)	308, 691, 725
BmrFI	CCNGG	6 cut(s)	270, 293, 620, 621, 728, 786
BmsI	GCATC	4 cut(s)	147, 350, 361, 721
BoxI	GACNNNNGTC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	4 cut(s)	620, 621, 728, 786
BsaJI	CCNNGG	6 cut(s)	292, 562, 618, 619, 693, 784
BsaWI	WCCGGW	3 cut(s)	356, 377, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 253, 275, 465
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	270, 293
BseDI	CCNNGG	6 cut(s)	292, 562, 618, 619, 693, 784
BseGI	GGATG	4 cut(s)	138, 165, 365, 736
BseLI	CCNNNNNNNGG	4 cut(s)	171, 253, 275, 465
BseMII	CTCAG	2 cut(s)	100, 168
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	5 cut(s)	329, 352, 578, 602, 728
BseXI	GCAGC	3 cut(s)	224, 399, 656
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	3 cut(s)	257, 307, 414
BshNI	GGYRCC	1 cut(s)	723
BshTI	ACCGGT	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	578
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	6 cut(s)	357, 378, 399, 620, 728, 786
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	4 cut(s)	171, 253, 275, 465
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	257, 307, 414
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	5 cut(s)	329, 352, 578, 602, 728
Bsp13I	TCCGGA	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	257, 307, 414
BspCNI	CTCAG	2 cut(s)	99, 167
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	308, 691, 725
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	723
BsrBI	CCGCTC	1 cut(s)	721
BsrFI	RCCGGY	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	6 cut(s)	292, 562, 618, 619, 693, 784
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	270, 293
Bst4CI	ACNGT	5 cut(s)	437, 563, 646, 740, 769
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	19, 325
BstDEI	CTNAG	3 cut(s)	86, 154, 747
BstDSI	CCRYGG	2 cut(s)	562, 693
BstF5I	GGATG	4 cut(s)	138, 165, 365, 736
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	270, 293
BstNSI	RCATGY	1 cut(s)	21
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	6 cut(s)	268, 291, 618, 619, 726, 784
BstSFI	CTRYAG	2 cut(s)	330, 799
BstSLI	GKGCMC	5 cut(s)	329, 352, 578, 602, 728
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	224, 399, 656
BstXI	CCANNNNNNTGG	1 cut(s)	769
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	257, 307, 414
BtgI	CCRYGG	2 cut(s)	562, 693
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	138, 165, 365, 736
BtsI	GCAGTG	2 cut(s)	270, 602
BtsIMutI	CAGTG	5 cut(s)	214, 270, 578, 602, 765
Cac8I	GCNNGC	2 cut(s)	19, 325
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	255, 306, 689
Cfr9I	CCCGGG	1 cut(s)	619
Csp6I	GTAC	3 cut(s)	642, 649, 664
CspAI	ACCGGT	1 cut(s)	398
CviAII	CATG	2 cut(s)	18, 383
CviQI	GTAC	3 cut(s)	642, 649, 664
DdeI	CTNAG	3 cut(s)	86, 154, 747
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	596
Eco32I	GATATC	2 cut(s)	226, 586
Eco47I	GGWCC	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	268, 291
EcoRV	GATATC	2 cut(s)	226, 586
FaeI	CATG	2 cut(s)	21, 386
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	2 cut(s)	17, 382
FauI	CCCGC	2 cut(s)	316, 782
Fnu4HI	GCNGC	9 cut(s)	213, 258, 261, 274, 277, 388, 409, 412, 670
FokI	GGATG	4 cut(s)	125, 152, 372, 743
Fsp4HI	GCNGC	9 cut(s)	213, 258, 261, 274, 277, 388, 409, 412, 670
FspBI	CTAG	2 cut(s)	311, 455
GluI	GCNGC	9 cut(s)	213, 258, 261, 274, 277, 388, 409, 412, 670
HaeIII	GGCC	3 cut(s)	257, 307, 414
HapII	CCGG	6 cut(s)	357, 378, 399, 620, 728, 786
Hin1II	CATG	2 cut(s)	21, 386
HincII	GTYRAC	2 cut(s)	440, 514
HindII	GTYRAC	2 cut(s)	440, 514
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	3 cut(s)	219, 299, 568
HpaII	CCGG	6 cut(s)	357, 378, 399, 620, 728, 786
HphI	GGTGA	2 cut(s)	169, 413
Hpy166II	GTNNAC	5 cut(s)	440, 514, 576, 649, 689
Hpy188I	TCNGA	3 cut(s)	89, 230, 396
Hpy188III	TCNNGA	2 cut(s)	95, 378
Hpy8I	GTNNAC	5 cut(s)	440, 514, 576, 649, 689
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	5 cut(s)	437, 563, 646, 740, 769
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	17, 212, 363, 576, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	86, 154, 747
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	21, 386
Kpn2I	TCCGGA	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	199, 681, 718
Lsp1109I	GCAGC	3 cut(s)	224, 399, 656
LweI	GCATC	4 cut(s)	147, 350, 361, 721
MaeI	CTAG	2 cut(s)	311, 455
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	401, 629, 740
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	721
MboI	GATC	1 cut(s)	174
MhlI	GDGCHC	5 cut(s)	329, 352, 578, 602, 728
MluCI	AATT	5 cut(s)	7, 80, 90, 484, 673
MnlI	CCTC	2 cut(s)	95, 425
MroI	TCCGGA	1 cut(s)	377
MseI	TTAA	2 cut(s)	288, 471
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	6 cut(s)	357, 378, 399, 620, 728, 786
MspR9I	CCNGG	6 cut(s)	270, 293, 620, 621, 728, 786
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	270, 293
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	4 cut(s)	620, 621, 728, 786
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	21, 386
NlaIV	GGNNCC	3 cut(s)	308, 691, 725
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	21
PaeI	GCATGC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	219, 299, 568
PflMI	CCANNNNNTGG	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	9 cut(s)	214, 259, 262, 275, 278, 389, 410, 413, 671
PshAI	GACNNNNGTC	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	268, 291
PspGI	CCWGG	2 cut(s)	268, 291
PspN4I	GGNNCC	3 cut(s)	308, 691, 725
PspPI	GGNCC	3 cut(s)	255, 306, 689
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	643, 650, 665
RsaNI	GTAC	3 cut(s)	642, 649, 664
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	288, 471
SatI	GCNGC	9 cut(s)	213, 258, 261, 274, 277, 388, 409, 412, 670
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	255, 306, 689
ScaI	AGTACT	1 cut(s)	665
ScrFI	CCNGG	6 cut(s)	270, 293, 620, 621, 728, 786
SduI	GDGCHC	5 cut(s)	329, 352, 578, 602, 728
SetI	ASST	8 cut(s)	52, 152, 288, 318, 337, 392, 612, 686
SfaNI	GCATC	4 cut(s)	147, 350, 361, 721
SfcI	CTRYAG	2 cut(s)	330, 799
SinI	GGWCC	1 cut(s)	689
SmaI	CCCGGG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	5 cut(s)	7, 80, 90, 484, 673
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	2 cut(s)	311, 455
StyD4I	CCNGG	6 cut(s)	268, 291, 618, 619, 726, 784
TaaI	ACNGT	5 cut(s)	437, 563, 646, 740, 769
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	4 cut(s)	5, 112, 222, 498
TasI	AATT	5 cut(s)	7, 80, 90, 484, 673
TatI	WGTACW	2 cut(s)	648, 663
TauI	GCSGC	6 cut(s)	260, 263, 276, 279, 411, 414
TfiI	GAWTC	3 cut(s)	219, 299, 568
Tru1I	TTAA	2 cut(s)	288, 471
Tru9I	TTAA	2 cut(s)	288, 471
TscAI	CASTG	5 cut(s)	214, 270, 578, 602, 772
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	3 cut(s)	212, 387, 669
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	484
TspMI	CCCGGG	1 cut(s)	619
TspRI	CASTG	5 cut(s)	214, 270, 578, 602, 772
Van91I	CCANNNNNTGG	1 cut(s)	171
VneI	GTGCAC	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	3 cut(s)	7, 80, 90
XceI	RCATGY	1 cut(s)	21
XmaI	CCCGGG	1 cut(s)	619
XspI	CTAG	2 cut(s)	311, 455
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.