Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

15026984 .. 15027271

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG173400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTCTGGTTGATGGGTTCGATGTCCCAATGGACTTTATTCCCATCTCTAACGGTTGCACTAGGGGCATCAAATGCACAGCGGATATAAACGGACAGTGCCCCACTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAATTGATCAGTATTGTCGTAATTCTGGAAACTGTGATCCTACAGACTACTCTAGGTTTTTTAAAAGTCACTGCCCGGATGCTTATAGTTACCCTAAGGATGATGCATGCAACCAGCACATTTACTTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

95

Amino Acids

10.53

Weight (kDa)

5.4

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	2 - 89	5e-22	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	185
AsuC2I	CCSGG	2 cut(s)	123, 230
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	121
BccI	CCATC	2 cut(s)	8, 53
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	2 cut(s)	123, 230
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	63, 207
BfmI	CTRYAG	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	123, 230
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	123, 230
BmsI	GCATC	3 cut(s)	78, 223, 247
BpuMI	CCSGG	2 cut(s)	123, 230
Bse21I	CCTNAGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	238, 259
BseMII	CTCAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	123, 230
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	104, 121
Bsp143I	GATC	2 cut(s)	160, 190
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	185
BssMI	GATC	2 cut(s)	160, 190
Bst4CI	ACNGT	4 cut(s)	56, 99, 148, 188
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	108, 249
BstF5I	GGATG	2 cut(s)	238, 259
BstKTI	GATC	2 cut(s)	163, 193
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	160, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 75
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	121, 228
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	238, 259
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	104, 144, 223
Cac8I	GCNNGC	1 cut(s)	262
CviAII	CATG	2 cut(s)	141, 261
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	108, 249
DpnI	GATC	2 cut(s)	162, 192
DpnII	GATC	2 cut(s)	160, 190
DraI	TTTAAA	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	121
Eco81I	CCTNAGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	2 cut(s)	144, 264
FaiI	YATR	4 cut(s)	89, 142, 240, 262
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	140, 260
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	2 cut(s)	245, 266
FriOI	GRGCYC	1 cut(s)	121
FspBI	CTAG	2 cut(s)	63, 207
HapII	CCGG	2 cut(s)	123, 230
Hin1II	CATG	2 cut(s)	144, 264
HpaII	CCGG	2 cut(s)	123, 230
Hpy188III	TCNNGA	1 cut(s)	180
HpyCH4III	ACNGT	4 cut(s)	56, 99, 148, 188
HpyCH4V	TGCA	5 cut(s)	60, 78, 144, 260, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 75
HpyF3I	CTNAG	2 cut(s)	108, 249
Hsp92II	CATG	2 cut(s)	144, 264
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 190
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	136, 165, 243, 281
LweI	GCATC	3 cut(s)	78, 223, 247
MaeI	CTAG	2 cut(s)	63, 207
MaeIII	GTNAC	3 cut(s)	131, 221, 242
MalI	GATC	2 cut(s)	162, 192
MboI	GATC	2 cut(s)	160, 190
MhlI	GDGCHC	2 cut(s)	104, 121
MluCI	AATT	2 cut(s)	156, 175
MnlI	CCTC	2 cut(s)	108, 119
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	123, 230
MspR9I	CCNGG	2 cut(s)	123, 230
MwoI	GCNNNNNNNGC	2 cut(s)	66, 75
NciI	CCSGG	2 cut(s)	123, 230
NdeII	GATC	2 cut(s)	160, 190
NlaIII	CATG	2 cut(s)	144, 264
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	160, 190
ScrFI	CCNGG	2 cut(s)	123, 230
SduI	GDGCHC	2 cut(s)	104, 121
SetI	ASST	1 cut(s)	212
SfaNI	GCATC	3 cut(s)	78, 223, 247
SfcI	CTRYAG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	2 cut(s)	156, 175
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	63, 207
StyD4I	CCNGG	2 cut(s)	121, 228
TaaI	ACNGT	4 cut(s)	56, 99, 148, 188
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	156, 175
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	3 cut(s)	104, 151, 230
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	104, 151, 230
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	2 cut(s)	63, 207
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.