Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

1152638 .. 1153704

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGCCTTCTCAAAAACCTCCCTACTGTTTTGTCCATCCTTTACTTTGCTGCATCAACCGTTAATGCAGCGACCTTCAATATAAAAAACAACTGCCCCTTCACTGTTTGGGCCGGCGCAGTGCCAGGCGGTGGCAAACAACTCGGCACCGGCCAAACATGGACGATAAATGTGGCAGCCGGAACTAAAGGAGCTCGCATTTGGCCCCGAACAAATTGCAACTTTGATGGAGCCGGACGTGGAAGATGCCAAACCGGTGACTGCGGCGGTCTCCTCCAGTGTCAAGGCTATGGCCAGCCCCCAAACACCCTCGCCGAATATGCACTTAACCAATACATGAACAGGGATTTCTATGATATCTCTCTGATTGATGGCTTCAATGTCCCGATGGACTTTAGTCCTATCTCTAACGGCTGCACTAGGGGTATCAGATGCACCGCCGATATCAATGGACAGTGCCCGGCGCAGTTGAGGGCTCCTGGTGGATGTAACAATGCGTGCACTGTGTTCAAAACCGATCAGTACTGCTGTAATTCTGGTCACTGTGGTCCTACAGACTACTCTAGGTTTTTCAAGCAGCGGTGCCCGGATGCTTACAGTTACCCTAAAGATGATGAAACCAGCACTGTGCTTTTTACTTGCCCTGGCGGTACTAACTATAGGGTTGTGTTCTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

227

Amino Acids

24.4

Weight (kDa)

8.31

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	30 - 226	5.7e-62	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 582
AccB7I	CCANNNNNTGG	1 cut(s)	131
AciI	CCGC	6 cut(s)	129, 264, 267, 438, 580, 648
AcoI	YGGCCR	2 cut(s)	151, 292
AfaI	GTAC	2 cut(s)	524, 652
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	79, 379, 511, 574
AjiI	CACGTC	1 cut(s)	239
AjnI	CCWGG	3 cut(s)	124, 478, 643
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	2 cut(s)	196, 503
Alw26I	GTCTC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	499
AoxI	GGCC	4 cut(s)	111, 151, 203, 292
ApaLI	GTGCAC	1 cut(s)	499
ApeKI	GCWGC	5 cut(s)	50, 68, 176, 414, 577
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	119, 466
AspS9I	GGNCC	3 cut(s)	111, 204, 548
AsuC2I	CCSGG	2 cut(s)	461, 587
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	3 cut(s)	461, 503, 587
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	2 cut(s)	146, 582
BanII	GRGCYC	2 cut(s)	196, 478
Bbv12I	GWGCWC	2 cut(s)	196, 503
BbvI	GCAGC	5 cut(s)	37, 80, 188, 401, 589
BccI	CCATC	4 cut(s)	44, 221, 365, 382
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	4 cut(s)	124, 158, 198, 232
BciT130I	CCWGG	3 cut(s)	126, 480, 645
BcnI	CCSGG	2 cut(s)	461, 587
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	420, 564
BfmI	CTRYAG	2 cut(s)	552, 658
BisI	GCNGC	6 cut(s)	51, 69, 177, 265, 415, 578
BlsI	GCNGC	6 cut(s)	52, 70, 178, 266, 416, 579
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	5 cut(s)	126, 461, 480, 587, 645
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	111, 204, 548
BmiI	GGNNCC	5 cut(s)	148, 206, 232, 477, 584
BmrFI	CCNGG	5 cut(s)	126, 461, 480, 587, 645
BmsI	GCATC	4 cut(s)	62, 236, 422, 580
BoxI	GACNNNNGTC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	461, 587
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	3 cut(s)	113, 149, 254
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	3 cut(s)	126, 480, 645
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	3 cut(s)	36, 491, 595
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	3 cut(s)	461, 503, 587
BseXI	GCAGC	5 cut(s)	37, 80, 188, 401, 589
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	4 cut(s)	113, 153, 205, 294
BshNI	GGYRCC	2 cut(s)	146, 582
BshTI	ACCGGT	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	196, 503
BsiSI	CCGG	7 cut(s)	114, 150, 180, 234, 255, 461, 587
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	113, 153, 205, 294
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	5 cut(s)	196, 461, 478, 503, 587
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	6 cut(s)	129, 264, 267, 438, 580, 648
BspANI	GGCC	4 cut(s)	113, 153, 205, 294
BspLI	GGNNCC	5 cut(s)	148, 206, 232, 477, 584
BspT107I	GGYRCC	2 cut(s)	146, 582
BspTNI	GGTCTC	1 cut(s)	275
BsrFI	RCCGGY	3 cut(s)	113, 149, 254
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	3 cut(s)	113, 149, 254
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	517
Bst2UI	CCWGG	3 cut(s)	126, 480, 645
Bst4CI	ACNGT	8 cut(s)	28, 61, 106, 456, 505, 545, 599, 628
BstC8I	GCNNGC	4 cut(s)	115, 196, 296, 499
BstF5I	GGATG	3 cut(s)	36, 491, 595
BstHHI	GCGC	2 cut(s)	119, 466
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	3 cut(s)	126, 480, 645
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	5 cut(s)	124, 459, 478, 585, 643
BstSFI	CTRYAG	2 cut(s)	552, 658
BstSLI	GKGCMC	3 cut(s)	461, 503, 587
BstV1I	GCAGC	5 cut(s)	37, 80, 188, 401, 589
BsuRI	GGCC	4 cut(s)	113, 153, 205, 294
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	3 cut(s)	36, 491, 595
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	7 cut(s)	102, 126, 284, 461, 501, 541, 624
Cac8I	GCNNGC	4 cut(s)	115, 196, 296, 499
CfoI	GCGC	2 cut(s)	119, 466
Cfr10I	RCCGGY	3 cut(s)	113, 149, 254
Cfr13I	GGNCC	3 cut(s)	111, 204, 548
Csp6I	GTAC	2 cut(s)	523, 651
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	2 cut(s)	159, 337
CviQI	GTAC	2 cut(s)	523, 651
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	151, 292
Ecl136II	GAGCTC	1 cut(s)	194
Eco24I	GRGCYC	2 cut(s)	196, 478
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	2 cut(s)	358, 445
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	124, 478, 643
EcoRV	GATATC	2 cut(s)	358, 445
EcoT38I	GRGCYC	2 cut(s)	196, 478
FaeI	CATG	2 cut(s)	162, 340
FaiI	YATR	7 cut(s)	83, 160, 291, 321, 338, 354, 660
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	158, 336
Fnu4HI	GCNGC	6 cut(s)	51, 69, 177, 265, 415, 578
FokI	GGATG	3 cut(s)	23, 498, 602
FriOI	GRGCYC	2 cut(s)	196, 478
Fsp4HI	GCNGC	6 cut(s)	51, 69, 177, 265, 415, 578
FspBI	CTAG	2 cut(s)	420, 564
GlaI	GCGC	2 cut(s)	118, 465
GluI	GCNGC	6 cut(s)	51, 69, 177, 265, 415, 578
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	113, 153, 205, 294
HapII	CCGG	7 cut(s)	114, 150, 180, 234, 255, 461, 587
HhaI	GCGC	2 cut(s)	119, 466
Hin1II	CATG	2 cut(s)	162, 340
Hin6I	GCGC	2 cut(s)	117, 464
HinP1I	GCGC	2 cut(s)	117, 464
HpaII	CCGG	7 cut(s)	114, 150, 180, 234, 255, 461, 587
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	2 cut(s)	366, 431
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	17, 85, 109
HpyCH4III	ACNGT	8 cut(s)	28, 61, 106, 456, 505, 545, 599, 628
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	7 cut(s)	53, 68, 219, 323, 417, 435, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	2 cut(s)	162, 340
HspAI	GCGC	2 cut(s)	117, 464
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	3 cut(s)	191, 230, 481
Lsp1109I	GCAGC	5 cut(s)	37, 80, 188, 401, 589
LweI	GCATC	4 cut(s)	62, 236, 422, 580
MaeI	CTAG	2 cut(s)	420, 564
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	4 cut(s)	257, 488, 539, 599
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	1 cut(s)	255
MhlI	GDGCHC	5 cut(s)	196, 461, 478, 503, 587
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	2 cut(s)	214, 532
MluNI	TGGCCA	1 cut(s)	294
MnlI	CCTC	4 cut(s)	29, 284, 320, 465
Mox20I	TGGCCA	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	63, 327
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	7 cut(s)	114, 150, 180, 234, 255, 461, 587
MspR9I	CCNGG	5 cut(s)	126, 461, 480, 587, 645
MvaI	CCWGG	3 cut(s)	126, 480, 645
MwoI	GCNNNNNNNGC	1 cut(s)	320
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	461, 587
NdeII	GATC	1 cut(s)	517
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	162, 340
NlaIV	GGNNCC	5 cut(s)	148, 206, 232, 477, 584
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	257, 539
PdiI	GCCGGC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	52, 70, 178, 266, 416, 579
PshAI	GACNNNNGTC	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	3 cut(s)	124, 478, 643
PspGI	CCWGG	3 cut(s)	124, 478, 643
PspN4I	GGNNCC	5 cut(s)	148, 206, 232, 477, 584
PspPI	GGNCC	3 cut(s)	111, 204, 548
RsaI	GTAC	2 cut(s)	524, 652
RsaNI	GTAC	2 cut(s)	523, 651
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	63, 327
SatI	GCNGC	6 cut(s)	51, 69, 177, 265, 415, 578
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	3 cut(s)	111, 204, 548
ScaI	AGTACT	1 cut(s)	524
ScrFI	CCNGG	5 cut(s)	126, 461, 480, 587, 645
SduI	GDGCHC	5 cut(s)	196, 461, 478, 503, 587
SetI	ASST	5 cut(s)	21, 77, 196, 241, 569
SfaNI	GCATC	4 cut(s)	62, 236, 422, 580
SfcI	CTRYAG	2 cut(s)	552, 658
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	2 cut(s)	214, 532
SsiI	CCGC	6 cut(s)	129, 264, 267, 438, 580, 648
SspMI	CTAG	2 cut(s)	420, 564
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	5 cut(s)	124, 459, 478, 585, 643
TaaI	ACNGT	8 cut(s)	28, 61, 106, 456, 505, 545, 599, 628
TaiI	ACGT	1 cut(s)	241
TasI	AATT	2 cut(s)	214, 532
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	63, 327
Tru9I	TTAA	2 cut(s)	63, 327
TscAI	CASTG	7 cut(s)	109, 126, 284, 461, 508, 548, 631
TseFI	GTSAC	2 cut(s)	257, 539
TseI	GCWGC	5 cut(s)	50, 68, 176, 414, 577
Tsp45I	GTSAC	2 cut(s)	257, 539
TspDTI	ATGAA	2 cut(s)	353, 630
TspRI	CASTG	7 cut(s)	109, 126, 284, 461, 508, 548, 631
Van91I	CCANNNNNTGG	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	548
XspI	CTAG	2 cut(s)	420, 564
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.