Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

15035264 .. 15035551

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGACTTTAGTCCCACCTCTAACGGTTGCACTAGGGGTATCAAATGCACGGCGGATATAAACGGACAGTGCCCCACTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAACTGATCAGTATTGTTGTAATTCTGGAAACTGTGGCCCTACAGACTATTCTAGGTTTTTTAAAAGTCGTTGCCCGGATGCTTATAGTTACCCTAAGGATGATGCAACCAGTACATTTACTTGCCCGGGTGGCACAAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

95

Amino Acids

10.3

Weight (kDa)

8.0

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	4 - 95	3.2e-26	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	4 cut(s)	93, 200, 251, 252
AvaI	CYCGRG	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	4 cut(s)	93, 200, 251, 252
BfaI	CTAG	2 cut(s)	33, 177
BfmI	CTRYAG	2 cut(s)	165, 265
BglI	GCCNNNNNGGC	1 cut(s)	255
Bme1390I	CCNGG	4 cut(s)	93, 200, 251, 252
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	93, 200, 251, 252
BmsI	GCATC	2 cut(s)	193, 217
BoxI	GACNNNNGTC	1 cut(s)	9
BpuMI	CCSGG	4 cut(s)	93, 200, 251, 252
BsaJI	CCNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	234
Bse21I	CCTNAGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	208, 229
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	93, 200, 251
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	74, 91
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	26, 69, 118, 158
BstDEI	CTNAG	2 cut(s)	78, 219
BstF5I	GGATG	2 cut(s)	208, 229
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	4 cut(s)	91, 198, 249, 250
BstSFI	CTRYAG	2 cut(s)	165, 265
BstSLI	GKGCMC	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	208, 229
BtsIMutI	CAGTG	2 cut(s)	74, 114
Cfr13I	GGNCC	1 cut(s)	161
Cfr9I	CCCGGG	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	111, 285
CviJI	RGCY	2 cut(s)	89, 162
CviKI_1	RGCY	2 cut(s)	89, 162
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	2 cut(s)	78, 219
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	2 cut(s)	114, 288
FaiI	YATR	5 cut(s)	59, 112, 210, 267, 286
FatI	CATG	2 cut(s)	110, 284
FbaI	TGATCA	1 cut(s)	130
FokI	GGATG	2 cut(s)	215, 236
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	33, 177
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	3 cut(s)	93, 200, 251
Hin1II	CATG	2 cut(s)	114, 288
HpaII	CCGG	3 cut(s)	93, 200, 251
Hpy188III	TCNNGA	1 cut(s)	150
HpyCH4III	ACNGT	4 cut(s)	26, 69, 118, 158
HpyCH4V	TGCA	4 cut(s)	30, 48, 114, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	78, 219
Hsp92II	CATG	2 cut(s)	114, 288
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	106, 135, 213, 247, 264
LweI	GCATC	2 cut(s)	193, 217
MaeI	CTAG	2 cut(s)	33, 177
MaeIII	GTNAC	2 cut(s)	101, 212
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	74, 91
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	3 cut(s)	28, 78, 89
MseI	TTAA	1 cut(s)	186
MspI	CCGG	3 cut(s)	93, 200, 251
MspR9I	CCNGG	4 cut(s)	93, 200, 251, 252
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	4 cut(s)	93, 200, 251, 252
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	114, 288
NlaIV	GGNNCC	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	93, 200, 251, 252
SduI	GDGCHC	2 cut(s)	74, 91
SetI	ASST	2 cut(s)	20, 182
SfaNI	GCATC	2 cut(s)	193, 217
SfcI	CTRYAG	2 cut(s)	165, 265
SmaI	CCCGGG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	33, 177
StyD4I	CCNGG	4 cut(s)	91, 198, 249, 250
TaaI	ACNGT	4 cut(s)	26, 69, 118, 158
TasI	AATT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	74, 121
TspGWI	ACGGA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	250
TspRI	CASTG	2 cut(s)	74, 121
XmaI	CCCGGG	1 cut(s)	250
XspI	CTAG	2 cut(s)	33, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.