Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

55224584 .. 55224823

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAACATGGATTTTATTGATATCTCTTTGATTGAAGGGTTCAATGTCCCAATGGACTTCAGTCCCACCTTCAATGGCTGCACTAGAGATATCAGATGCACAGAGGATATAAACGGACAGTGCCCCGCGCAGTTGAAGGCTCCCGGTGGATGTAACAATCCGTGCACTGTGTTCAAAACTGATAAGTATAGTTGTAATTCTGGAAACTGTGGTCCTACCGAGTACTCTAGATTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

79

Amino Acids

8.75

Weight (kDa)

4.52

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	3 - 79	8.5e-17	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	5 cut(s)	35, 43, 73, 136, 175
Alw21I	GWGCWC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	125, 167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	84, 228
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	86
BoxI	GACNNNNGTC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	155
BseSI	GKGCMC	2 cut(s)	125, 167
BseXI	GCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	32, 48
BsmFI	GGGAC	2 cut(s)	32, 48
Bsp1286I	GDGCHC	2 cut(s)	125, 167
BspACI	CCGC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	120, 169, 209
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	2 cut(s)	125, 167
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	125, 165
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	2 cut(s)	78, 140
CviKI_1	RGCY	2 cut(s)	78, 140
CviQI	GTAC	1 cut(s)	223
Eco32I	GATATC	2 cut(s)	22, 91
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	43
EcoRV	GATATC	2 cut(s)	22, 91
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 110, 189
FaqI	GGGAC	2 cut(s)	32, 48
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	84, 228
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	79
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	201, 228
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	29, 79, 130
HpyCH4III	ACNGT	3 cut(s)	120, 169, 209
HpyCH4V	TGCA	3 cut(s)	81, 99, 165
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	2 cut(s)	157, 186
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	2 cut(s)	84, 228
MaeIII	GTNAC	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	125, 167
MluCI	AATT	1 cut(s)	196
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	238
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	128
NciI	CCSGG	1 cut(s)	144
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	80
PshAI	GACNNNNGTC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	125, 167
SetI	ASST	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	86
SgeI	CNNG	9 cut(s)	19, 96, 137, 139, 155, 156, 174, 213, 232
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	84, 228
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	120, 169, 209
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TscAI	CASTG	2 cut(s)	125, 172
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	129, 150
TspRI	CASTG	2 cut(s)	125, 172
VneI	GTGCAC	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	2 cut(s)	84, 228
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.