Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

10361502 .. 10362185

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGTCTTTTCATCAAACACTACTTACCCATCACTTTCTTCCTCGCCATCCCTCTCTACTCCATCTTGTCCCATGCAGCCAGTTTCAACATCCGAAACAACTGCCCCTACACTGTCTGGGCAGCAGCTGTGCCAGGCGGTGGCAGACAGCTCAACCGAGGCCAAACATGGACGCTAAATGTGAAGCCTGGAACTAAAATGGCTCGAATTTGGGCCCGAACCAATTGTGCCTTCGACAACTCAGGTCGTGGCCGGTGCCAAACCGGCGACTGCGGAGGATTCCTCCAATGCCAAGCCTATGGTTCACCCCCAAACACCCTAGCCGAGTATGCCCTAAACCAATTTGGAAACAAGGACTTTTTCGACATTTCACTTGTAGACGGGTTCAATGTTCCAATGGAATTTAGTCCCACGTCTAATGGGTGCACCAGGGGGATCAAATGTGCTCAAGATATCAAAACGCAGTGCCCTAATGAGTTGAAGGCCCCAGGTGGCTGCCACAACCCTTGCACTGTGTACAAAACTGACAAGTATTGTTGCAATTCGGGGAGATGTGGGTCTACAAATTTATCCAAGTTTTTTAAGGATCGGTGTAGGGATGCTTATAGTTACCCTAAAGATGATCTAACTAGCACTTTTACTTGTCCTGGTGGGACTAATTACAAGGTTGTGTTCTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

228

Amino Acids

25.03

Weight (kDa)

8.92

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	2 cut(s)	378, 560
AciI	CCGC	2 cut(s)	138, 273
AclWI	GGATC	2 cut(s)	443, 594
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	207, 401, 565
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	88, 388, 481
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	5 cut(s)	133, 187, 428, 487, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	128, 151
AluI	AGCT	2 cut(s)	128, 151
Alw21I	GWGCWC	2 cut(s)	428, 448
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	443, 594
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	4 cut(s)	160, 213, 250, 483
ApaI	GGGCCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	4 cut(s)	77, 122, 125, 495
ApoI	RAATTY	3 cut(s)	207, 401, 565
AspS9I	GGNCC	3 cut(s)	213, 214, 484
AsuHPI	GGTGA	1 cut(s)	297
BaeGI	GKGCMC	3 cut(s)	217, 428, 470
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	428, 448
BbvI	GCAGC	4 cut(s)	89, 134, 137, 482
BccI	CCATC	3 cut(s)	38, 56, 71
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	5 cut(s)	135, 189, 430, 489, 648
BfaI	CTAG	2 cut(s)	320, 630
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	4 cut(s)	78, 123, 126, 496
BlsI	GCNGC	4 cut(s)	79, 124, 127, 497
Bme1390I	CCNGG	5 cut(s)	135, 189, 430, 489, 648
BmgBI	CACGTC	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	213, 214, 484
BmiI	GGNNCC	3 cut(s)	215, 257, 486
BmrFI	CCNGG	5 cut(s)	135, 189, 430, 489, 648
BmsI	GCATC	1 cut(s)	589
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpuEI	CTTGAG	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	157, 429, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	2 cut(s)	252, 263
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	5 cut(s)	135, 189, 430, 489, 648
BseDI	CCNNGG	3 cut(s)	157, 429, 487
BseGI	GGATG	3 cut(s)	48, 90, 604
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	3 cut(s)	217, 428, 470
BseXI	GCAGC	4 cut(s)	89, 134, 137, 482
BshFI	GGCC	4 cut(s)	162, 215, 252, 485
BshNI	GGYRCC	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	428, 448
BsiSI	CCGG	2 cut(s)	253, 264
BslFI	GGGAC	3 cut(s)	55, 393, 667
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	3 cut(s)	55, 393, 667
BsnI	GGCC	4 cut(s)	162, 215, 252, 485
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	4 cut(s)	217, 428, 448, 470
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	435, 586, 622
BspACI	CCGC	2 cut(s)	138, 273
BspANI	GGCC	4 cut(s)	162, 215, 252, 485
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	215, 257, 486
BspPI	GGATC	2 cut(s)	443, 594
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	252, 263
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	2 cut(s)	252, 263
BssECI	CCNNGG	3 cut(s)	157, 429, 487
BssMI	GATC	3 cut(s)	435, 586, 622
Bst2UI	CCWGG	5 cut(s)	135, 189, 430, 489, 648
Bst4CI	ACNGT	2 cut(s)	115, 514
BstAUI	TGTACA	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	48, 90, 604
BstKTI	GATC	3 cut(s)	438, 589, 625
BstMBI	GATC	3 cut(s)	435, 586, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 329
BstNI	CCWGG	5 cut(s)	135, 189, 430, 489, 648
BstSCI	CCNGG	5 cut(s)	133, 187, 428, 487, 646
BstSLI	GKGCMC	3 cut(s)	217, 428, 470
BstV1I	GCAGC	4 cut(s)	89, 134, 137, 482
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	4 cut(s)	162, 215, 252, 485
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	48, 90, 604
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	3 cut(s)	111, 470, 510
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	252, 263
Cfr13I	GGNCC	3 cut(s)	213, 214, 484
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	517
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	2 cut(s)	74, 168
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	3 cut(s)	437, 588, 624
DpnII	GATC	3 cut(s)	435, 586, 622
EaeI	YGGCCR	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	5 cut(s)	133, 187, 428, 487, 646
EcoRV	GATATC	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	77, 171
FaiI	YATR	5 cut(s)	75, 169, 300, 330, 606
FaqI	GGGAC	3 cut(s)	55, 393, 667
FatI	CATG	2 cut(s)	73, 167
FblI	GTMKAC	2 cut(s)	378, 560
Fnu4HI	GCNGC	4 cut(s)	78, 123, 126, 496
FokI	GGATG	3 cut(s)	35, 77, 611
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	4 cut(s)	78, 123, 126, 496
FspBI	CTAG	2 cut(s)	320, 630
GluI	GCNGC	4 cut(s)	78, 123, 126, 496
HaeIII	GGCC	4 cut(s)	162, 215, 252, 485
HapII	CCGG	2 cut(s)	253, 264
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	77, 171
HinfI	GANTC	2 cut(s)	4, 279
HpaII	CCGG	2 cut(s)	253, 264
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	5 cut(s)	305, 379, 426, 517, 561
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	5 cut(s)	305, 379, 426, 517, 561
HpyAV	CCTTC	2 cut(s)	241, 475
HpyCH4III	ACNGT	2 cut(s)	115, 514
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	77, 426, 510, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 329
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	77, 171
Kzo9I	GATC	3 cut(s)	435, 586, 622
Lsp1109I	GCAGC	4 cut(s)	89, 134, 137, 482
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	320, 630
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	3 cut(s)	437, 588, 624
MboI	GATC	3 cut(s)	435, 586, 622
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	223
MhlI	GDGCHC	4 cut(s)	217, 428, 448, 470
MluCI	AATT	7 cut(s)	207, 223, 341, 401, 541, 565, 658
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	53, 63, 152, 269, 293
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	253, 264
MspR9I	CCNGG	5 cut(s)	135, 189, 430, 489, 648
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	5 cut(s)	135, 189, 430, 489, 648
MwoI	GCNNNNNNNGC	2 cut(s)	264, 329
NdeII	GATC	3 cut(s)	435, 586, 622
NlaIII	CATG	2 cut(s)	77, 171
NlaIV	GGNNCC	3 cut(s)	215, 257, 486
NmeAIII	GCCGAG	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	79, 124, 127, 497
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	5 cut(s)	133, 187, 428, 487, 646
PspGI	CCWGG	5 cut(s)	133, 187, 428, 487, 646
PspN4I	GGNNCC	3 cut(s)	215, 257, 486
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	3 cut(s)	213, 214, 484
PstNI	CAGNNNCTG	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	78, 123, 126, 496
Sau3AI	GATC	3 cut(s)	435, 586, 622
Sau96I	GGNCC	3 cut(s)	213, 214, 484
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	5 cut(s)	135, 189, 430, 489, 648
SduI	GDGCHC	4 cut(s)	217, 428, 448, 470
SetI	ASST	6 cut(s)	130, 153, 247, 416, 493, 669
SfaNI	GCATC	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	7 cut(s)	207, 223, 341, 401, 541, 565, 658
SsiI	CCGC	2 cut(s)	138, 273
SspMI	CTAG	2 cut(s)	320, 630
StyD4I	CCNGG	5 cut(s)	133, 187, 428, 487, 646
TaaI	ACNGT	2 cut(s)	115, 514
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	205, 234, 363
TasI	AATT	7 cut(s)	207, 223, 341, 401, 541, 565, 658
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	3 cut(s)	118, 470, 517
TseI	GCWGC	4 cut(s)	77, 122, 125, 495
TspRI	CASTG	3 cut(s)	118, 470, 517
Van91I	CCANNNNNTGG	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	424
XapI	RAATTY	3 cut(s)	207, 401, 565
XmiI	GTMKAC	2 cut(s)	378, 560
XspI	CTAG	2 cut(s)	320, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.