Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

10376653 .. 10378375

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCCACAAGAAGAAGCTTGTCAACTAGCCTTCTCACTTCCTTGATCAAGCCTGATAGGACACTTAGTGCTTCTGAATACTCCTTGCTTTCCATCAAAAGAGATGCAAGCCTGGCCTCCACTCGCTGTCGAAGGAAAGTTCGCTTCTCAGGGAAATCTGAAGATCAGATTAGTGATAGCTACCCTCAGGATGACAAAACAAGCTTATTTACATGCCCTGGCGGGACGAACTATAAGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

9.6

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	111, 217
AluBI	AGCT	3 cut(s)	18, 180, 204
AluI	AGCT	3 cut(s)	18, 180, 204
AoxI	GGCC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	186
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	113, 219
BclI	TGATCA	1 cut(s)	45
BfaI	CTAG	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	113, 219
BmrFI	CCNGG	2 cut(s)	113, 219
BmsI	GCATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	113, 219
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	162, 200
BshFI	GGCC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	45, 163
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	161, 199
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	45, 163
Bst2UI	CCWGG	2 cut(s)	113, 219
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	65, 148, 186
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	48, 166
BstMBI	GATC	2 cut(s)	45, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	113, 219
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	111, 217
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	109
CviAII	CATG	2 cut(s)	213, 252
CviJI	RGCY	7 cut(s)	18, 30, 52, 111, 116, 180, 204
CviKI_1	RGCY	7 cut(s)	18, 30, 52, 111, 116, 180, 204
DdeI	CTNAG	3 cut(s)	65, 148, 186
DpnI	GATC	2 cut(s)	47, 165
DpnII	GATC	2 cut(s)	45, 163
DraIII	CACNNNGTG	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	111, 217
FaeI	CATG	2 cut(s)	216, 255
FaiI	YATR	3 cut(s)	214, 234, 253
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	212, 251
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	45
FokI	GGATG	1 cut(s)	203
FspBI	CTAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	216, 255
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	2 cut(s)	16, 202
Hpy166II	GTNNAC	2 cut(s)	6, 24
Hpy188I	TCNGA	3 cut(s)	76, 160, 168
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	6, 24
HpyAV	CCTTC	2 cut(s)	41, 126
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	65, 148, 186
Hsp92II	CATG	2 cut(s)	216, 255
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	45, 163
LpnPI	CCDG	7 cut(s)	66, 98, 125, 135, 173, 204, 231
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	27
MalI	GATC	2 cut(s)	47, 165
MboI	GATC	2 cut(s)	45, 163
MboII	GAAGA	2 cut(s)	24, 173
MnlI	CCTC	2 cut(s)	127, 195
MspR9I	CCNGG	2 cut(s)	113, 219
MvaI	CCWGG	2 cut(s)	113, 219
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	45, 163
NlaIII	CATG	2 cut(s)	216, 255
NspI	RCATGY	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	111, 217
PspGI	CCWGG	2 cut(s)	111, 217
Sau3AI	GATC	2 cut(s)	45, 163
ScrFI	CCNGG	2 cut(s)	113, 219
SetI	ASST	4 cut(s)	20, 182, 206, 240
SfaNI	GCATC	1 cut(s)	94
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	111, 217
TaqI	TCGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.