Rroxscaffold_4G00318370

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018609
Physical Location & Seq
Forward (+)
44512613 .. 44514191
1579 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00318370.1

Sequence Viewer

Length: 441 bp
ATGAAGTTGGTCCGAGGGCCGGGCGAAGAGCATGATGATCTTCTAGAGAGTGTCGGCGGCGATGAAGCGAAAGTTCATGGTGTAAGGGTTGTTGGTGGAGATGAAGTGGAAGGAGAGAAGAGGAACTACGAAGATTGTGATGAAGCAGTTGATTCCGGAGCATTGGTTCGGGGAGAAGATCTTCCACCACCGGACGGAGCGCATAGTCAGCTCATTTTGAGCCTCCAGAAGAAGCATTTGGGATTCTTAGCCACAACAAAAGAATACAAGATTTTGCATGTGGAGGAGGGAACAAGGGAAGTTCAGGGAAAACTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTGTTCAAAGATGAAAACCAATCTTTACAGTTGAAACTGCAACAGTGGATGACAAGCATTTCTAGTCTCTTACAGTTGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

5.21

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018609)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0061421
rosa_laevigata RLG00000034047
rosa_roxburghii Rroxscaffold_4G00318370 Rroxscaffold_6G00394370 Rroxscaffold_7G00190450
rosa_rugosa Rorug07G0050000
rosa_samantha Rh3BG297200 Rh6AG002500 Rh6AG229700
rosa_wichuraiana Rw2G039330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 19, 194
AgsI TTSAA 3 cut(s) 318, 361, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 211, 352
AluI AGCT 2 cut(s) 211, 352
Alw26I GTCTC 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 1 cut(s) 17
Asp700I GAANNNNTTC 2 cut(s) 180, 313
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 10, 17
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 326
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 44, 417
BfuI GTATCC 1 cut(s) 335
BglII AGATCT 1 cut(s) 178
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 17
BmrFI CCNGG 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 2 cut(s) 155, 190
BsaXI ACNNNNNCTCC 6 cut(s) 90, 120, 150, 180, 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 194
Bse21I CCTNAGG 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 19, 194
BseRI GAGGAG 1 cut(s) 299
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 3 cut(s) 20, 156, 191
BslI CCNNNNNNNGG 2 cut(s) 19, 194
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 37, 178
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 37, 178
Bst4CI ACNGT 4 cut(s) 338, 384, 399, 429
Bst6I CTCTTC 2 cut(s) 21, 113
BstDEI CTNAG 2 cut(s) 247, 326
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 40, 181
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 2 cut(s) 37, 178
BstMWI GCNNNNNNNGC 2 cut(s) 208, 330
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 326
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 343, 404
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 10, 17
CviAII CATG 3 cut(s) 32, 77, 278
CviJI RGCY 6 cut(s) 19, 211, 222, 251, 324, 352
CviKI_1 RGCY 6 cut(s) 19, 211, 222, 251, 324, 352
DdeI CTNAG 2 cut(s) 247, 326
DpnI GATC 2 cut(s) 39, 180
DpnII GATC 2 cut(s) 37, 178
Eam1104I CTCTTC 2 cut(s) 21, 113
EarI CTCTTC 2 cut(s) 21, 113
Eco47I GGWCC 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 326
FaeI CATG 3 cut(s) 35, 80, 281
FaiI YATR 4 cut(s) 33, 78, 204, 279
FatI CATG 3 cut(s) 31, 76, 277
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 44, 417
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 19
HapII CCGG 3 cut(s) 20, 156, 191
HhaI GCGC 1 cut(s) 202
Hin1II CATG 3 cut(s) 35, 80, 281
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 2 cut(s) 152, 243
HpaII CCGG 3 cut(s) 20, 156, 191
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 44, 156, 226
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 338, 384, 399, 429
HpyCH4V TGCA 3 cut(s) 277, 394, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 330
HpyF3I CTNAG 2 cut(s) 247, 326
Hsp92II CATG 3 cut(s) 35, 80, 281
HspAI GCGC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 2 cut(s) 37, 178
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 3 cut(s) 158, 197, 330
LpnPI CCDG 5 cut(s) 33, 169, 204, 239, 290
MaeI CTAG 2 cut(s) 44, 417
MalI GATC 2 cut(s) 39, 180
MboI GATC 2 cut(s) 37, 178
MboII GAAGA 7 cut(s) 32, 38, 130, 143, 173, 188, 241
MflI RGATCY 1 cut(s) 178
MnlI CCTC 5 cut(s) 8, 114, 233, 277, 280
MroI TCCGGA 1 cut(s) 155
MroXI GAANNNNTTC 2 cut(s) 180, 313
MspI CCGG 3 cut(s) 20, 156, 191
MspR9I CCNGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 208, 330
NciI CCSGG 1 cut(s) 21
NdeII GATC 2 cut(s) 37, 178
NlaIII CATG 3 cut(s) 35, 80, 281
NspI RCATGY 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 180, 313
PfeI GAWTC 2 cut(s) 152, 243
PkrI GCNGC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 10, 17
PsuI RGATCY 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 21
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 2 cut(s) 37, 178
Sau96I GGNCC 2 cut(s) 10, 17
ScrFI CCNGG 1 cut(s) 21
SetI ASST 2 cut(s) 213, 354
SinI GGWCC 1 cut(s) 10
SsiI CCGC 1 cut(s) 57
SspMI CTAG 2 cut(s) 44, 417
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 4 cut(s) 338, 384, 399, 429
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 152, 243
TscAI CASTG 2 cut(s) 343, 404
TspDTI ATGAA 6 cut(s) 17, 65, 78, 117, 156, 381
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 343, 404
VpaK11BI GGWCC 1 cut(s) 10
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 180, 313
XspI CTAG 2 cut(s) 44, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.