Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018609

Physical Location & Seq

Genomic Coordinates Reverse (-)

30554331 .. 30556175

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTGGGCATCTTCTTTAAGAGTTGGAATTTAAATGGGTTTGGCTGCATTTGCAGTATTTTGAAGGTTATTGATCTTCAAGAAGACCTTGATGGGGAGTTTGATTTGTTTACACCGGATGATATTGATTCTACTTTCCAAAATGTCACCTGGCTTACCAAGGCTCAGCGTCATCATCTTACTGGTCTCAGCGTCATCATCTTACTGGTGATTTTTGACTTACTTGATGTCAGGCTCAATGGGTTTTTAAGTTTGGAGAATTTGTTCAATCTTTGGATGGAAGACCGTGCCTTGGTTCCTTTGATTTTGGTTTGCTCAGCTCAGAAAATTGAATCTTTAAGGATGCATTTCTCAGGGAATGATTACTTGAACTTTAATTTGACTCCGAAAAGTACTTTTGTACGTCGCAAGATTGACAAAGAGCATGGCTTGGCTGCACAGGCTGTTCGTTGGCACAAGACCGGCAAGACCAAGGCTATAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PRC RimM UDPGP

Protein Analysis

162

Amino Acids

18.61

Weight (kDa)

7.76

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018609)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0061421
rosa_laevigata	RLG00000034047
rosa_roxburghii	Rroxscaffold_4G00318370 Rroxscaffold_6G00394370 Rroxscaffold_7G00190450
rosa_rugosa	Rorug07G0050000
rosa_samantha	Rh3BG297200 Rh6AG002500 Rh6AG229700
rosa_wichuraiana	Rw2G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	28, 259
AfaI	GTAC	2 cut(s)	394, 402
AfiI	CCNNNNNNNGG	2 cut(s)	94, 292
AgsI	TTSAA	5 cut(s)	64, 80, 268, 332, 370
AjnI	CCWGG	1 cut(s)	149
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	45, 434
ApoI	RAATTY	2 cut(s)	28, 259
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	139, 220
BbsI	GAAGAC	2 cut(s)	90, 288
BbvI	GCAGC	2 cut(s)	32, 421
BccI	CCATC	2 cut(s)	86, 271
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	46, 435
BlpI	GCTNAGC	2 cut(s)	165, 316
BlsI	GCNGC	2 cut(s)	47, 436
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	18, 333
BpiI	GAAGAC	2 cut(s)	90, 288
Bpu1102I	GCTNAGC	2 cut(s)	165, 316
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	159, 291, 471
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 292
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	187, 210
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	159, 291, 471
BseGI	GGATG	3 cut(s)	124, 282, 348
BseLI	CCNNNNNNNGG	2 cut(s)	94, 292
BseMII	CTCAG	5 cut(s)	179, 202, 330, 335, 366
BseNI	ACTGG	2 cut(s)	187, 210
BseXI	GCAGC	2 cut(s)	32, 421
BsgI	GTGCAG	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	116, 462
BslI	CCNNNNNNNGG	2 cut(s)	94, 292
BsmAI	GTCTC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	2 cut(s)	165, 316
BspCNI	CTCAG	5 cut(s)	178, 201, 329, 334, 365
BspLI	GGNNCC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	187, 210
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	159, 291, 471
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	3 cut(s)	159, 291, 471
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	165, 188, 316, 321, 352
BstF5I	GGATG	3 cut(s)	124, 282, 348
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 440
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	32, 421
BstV2I	GAAGAC	2 cut(s)	90, 288
BtsCI	GGATG	3 cut(s)	124, 282, 348
Cfr10I	RCCGGY	1 cut(s)	461
CseI	GACGC	2 cut(s)	158, 181
Csp6I	GTAC	2 cut(s)	393, 401
CviAII	CATG	1 cut(s)	425
CviJI	RGCY	9 cut(s)	45, 154, 164, 235, 320, 429, 434, 443, 476
CviKI_1	RGCY	9 cut(s)	45, 154, 164, 235, 320, 429, 434, 443, 476
CviQI	GTAC	2 cut(s)	393, 401
DdeI	CTNAG	5 cut(s)	165, 188, 316, 321, 352
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraI	TTTAAA	1 cut(s)	33
Eco130I	CCWWGG	3 cut(s)	159, 291, 471
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	3 cut(s)	159, 291, 471
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	159, 291, 471
FaeI	CATG	1 cut(s)	428
FaiI	YATR	2 cut(s)	426, 479
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	46, 435
FokI	GGATG	3 cut(s)	131, 289, 355
Fsp4HI	GCNGC	2 cut(s)	46, 435
GluI	GCNGC	2 cut(s)	46, 435
HapII	CCGG	2 cut(s)	116, 462
HgaI	GACGC	2 cut(s)	158, 181
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	3 cut(s)	128, 332, 382
HpaII	CCGG	2 cut(s)	116, 462
HphI	GGTGA	2 cut(s)	139, 220
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	324, 387
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	48, 54, 346, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 440
HpyF3I	CTNAG	5 cut(s)	165, 188, 316, 321, 352
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	129, 136, 163, 168, 191, 217, 339, 425, 475
Lsp1109I	GCAGC	2 cut(s)	32, 421
LweI	GCATC	2 cut(s)	18, 333
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	4, 68, 95, 293
MluCI	AATT	4 cut(s)	28, 259, 327, 376
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	5 cut(s)	18, 32, 248, 338, 375
MspI	CCGG	2 cut(s)	116, 462
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	51, 440
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	128, 332
PkrI	GCNGC	2 cut(s)	47, 436
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	297
RsaI	GTAC	2 cut(s)	394, 402
RsaNI	GTAC	2 cut(s)	393, 401
SaqAI	TTAA	5 cut(s)	18, 32, 248, 338, 375
SatI	GCNGC	2 cut(s)	46, 435
Sau3AI	GATC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	5 cut(s)	69, 90, 152, 322, 406
SfaNI	GCATC	2 cut(s)	18, 333
SmiI	ATTTAAAT	1 cut(s)	33
Sse9I	AATT	4 cut(s)	28, 259, 327, 376
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	159, 291, 471
SwaI	ATTTAAAT	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	406
TasI	AATT	4 cut(s)	28, 259, 327, 376
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	128, 332
Tru1I	TTAA	5 cut(s)	18, 32, 248, 338, 375
Tru9I	TTAA	5 cut(s)	18, 32, 248, 338, 375
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	45, 434
Tsp45I	GTSAC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	28, 259
XmnI	GAANNNNTTC	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.