Rroxscaffold_6G00394370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018609
Physical Location & Seq
Reverse (-)
14799256 .. 14808995
9740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394370.1

Sequence Viewer

Length: 996 bp
ATGTCTTTAACTGGTGTGGTACTTTCAAAGACACTTCAACAATTAAGTCAAGAAAAGAATGTTGCAAGCACCACGACTCCATCGTACAAGCCGAAGCCACGCCTTTCGATCACCGGCGACCAACTTGCCGCACCGAGCAAACTCAGGTCATCATTCCATCCCTCTGTCCTCCCTAACACACCAACATACGGGCACCACCACCCTCTTCACCGAACAACTCCAAGCAACACAAACCAAATTGGATCACCCCATTCCTATTTGAGCCCCTCCGATCCCGTCCTAGCACCACCAGATGAACATCTAGTGAAAATGGTGATCAAGATCTCTGAGCCTTCTAAAACCAAAGACAAACAAAAAGAAAAAGACAAAGAGAATGTTGGCAGACATCGGATACTCAAGCTCAATCATCGAATTAACGATTTACCAGATCTAGAGAGTGTCGGCAGCGATGAAGGGGAAGTTCATGGTGTAAGGGTTGTTGGTGGAGATGAAGTGGAAGGAGAGAAGAGGAACTGCGAAGATTGTGAAGAAGCGGTTGATTCGGAGCATTGGTCCGGGAGAAGATCTTCCACCACCGGATGGAGCCGTAGGCTAAGATCATGGCCACCGAGCAATCACCGGGAAGTTGTGAGAAAGCATAGGGTTTGCCTAAAGTGTGACTTTAGCTTCGCTAGGTTGAGAGGGCGTTACCCTTGCTTCGCTGGTAGTATCGGTGGCGTAGCACTAACGGTCAGCTCCCGGGAGACTAGGACTACAAGTACGCCCTATGAATTAAATTCGTCTTGGGCTTCGAATTCACAGGGTTGGCCCCGGATCACACCACAAGTCCTTATCCGTAAGGTAAGAGAAGAACCTTATGACGAGGTTAGTGCTCTTCTCGTCCACAAACTTGAAGAGAAGTCGGGTTCGCGGCAGCGAGCGGACAACTTGCACCCCACGGTGCTGGCACATCGTGCACATAGGAAAATAGACTGTTTGCATAACCTCCTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.1

Weight (kDa)

9.42

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018609)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0061421
rosa_laevigata RLG00000034047
rosa_roxburghii Rroxscaffold_4G00318370 Rroxscaffold_6G00394370 Rroxscaffold_7G00190450
rosa_rugosa Rorug07G0050000
rosa_samantha Rh3BG297200 Rh6AG002500 Rh6AG229700
rosa_wichuraiana Rw2G039330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 579
AccBSI CCGCTC 1 cut(s) 920
AccII CGCG 1 cut(s) 910
AciI CCGC 4 cut(s) 129, 533, 910, 920
AclWI GGATC 3 cut(s) 250, 266, 821
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 2 cut(s) 775, 793
AdeI CACNNNGTG 1 cut(s) 953
AfaI GTAC 3 cut(s) 21, 86, 760
AfiI CCNNNNNNNGG 2 cut(s) 188, 579
AgsI TTSAA 3 cut(s) 27, 38, 893
AluBI AGCT 3 cut(s) 400, 666, 735
AluI AGCT 3 cut(s) 400, 666, 735
Alw21I GWGCWC 2 cut(s) 874, 958
Alw26I GTCTC 1 cut(s) 737
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 3 cut(s) 250, 266, 821
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 2 cut(s) 602, 806
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 2 cut(s) 444, 913
ApoI RAATTY 2 cut(s) 775, 793
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
Asp700I GAANNNNTTC 1 cut(s) 565
AspS9I GGNCC 2 cut(s) 552, 807
AsuC2I CCSGG 5 cut(s) 556, 620, 739, 740, 811
AsuHPI GGTGA 5 cut(s) 103, 200, 237, 325, 608
AsuII TTCGAA 1 cut(s) 791
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 2 cut(s) 195, 958
BalI TGGCCA 1 cut(s) 604
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 2 cut(s) 874, 958
BbvI GCAGC 2 cut(s) 456, 925
BccI CCATC 3 cut(s) 88, 165, 573
BceAI ACGGC 1 cut(s) 570
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 851, 885
BciVI GTATCC 1 cut(s) 384
BclI TGATCA 1 cut(s) 315
BcnI CCSGG 5 cut(s) 556, 620, 739, 740, 811
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 5 cut(s) 281, 302, 431, 672, 747
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 3 cut(s) 321, 427, 563
BisI GCNGC 4 cut(s) 129, 445, 911, 914
BlsI GCNGC 4 cut(s) 130, 446, 912, 915
Bme1390I CCNGG 5 cut(s) 556, 620, 739, 740, 811
Bme18I GGWCC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 2 cut(s) 552, 807
BmiI GGNNCC 3 cut(s) 194, 584, 809
BmrFI CCNGG 5 cut(s) 556, 620, 739, 740, 811
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 5 cut(s) 556, 620, 739, 740, 811
BsaBI GATNNNNATC 2 cut(s) 297, 320
BsaJI CCNNGG 4 cut(s) 738, 809, 936, 988
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 6 cut(s) 61, 91, 477, 507, 536, 566
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 579
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 297, 320
BseDI CCNNGG 4 cut(s) 738, 809, 936, 988
BseGI GGATG 2 cut(s) 157, 584
BseJI GATNNNNATC 2 cut(s) 297, 320
BseLI CCNNNNNNNGG 2 cut(s) 188, 579
BseMII CTCAG 2 cut(s) 157, 318
BseNI ACTGG 1 cut(s) 16
BseSI GKGCMC 2 cut(s) 195, 958
BseXI GCAGC 2 cut(s) 456, 925
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 2 cut(s) 604, 808
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 874, 958
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 6 cut(s) 114, 555, 576, 619, 739, 811
BslI CCNNNNNNNGG 2 cut(s) 188, 579
BsmAI GTCTC 1 cut(s) 737
BsnI GGCC 2 cut(s) 604, 808
BsoBI CYCGRG 1 cut(s) 738
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 4 cut(s) 195, 266, 874, 958
Bsp143I GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
BspACI CCGC 4 cut(s) 129, 533, 910, 920
BspANI GGCC 2 cut(s) 604, 808
BspCNI CTCAG 2 cut(s) 156, 319
BspFNI CGCG 1 cut(s) 910
BspLI GGNNCC 3 cut(s) 194, 584, 809
BspPI GGATC 3 cut(s) 250, 266, 821
BspQI GCTCTTC 1 cut(s) 879
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 920
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 738, 809, 936, 988
BssMI GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
BssT1I CCWWGG 1 cut(s) 988
Bst4CI ACNGT 3 cut(s) 730, 940, 974
Bst6I CTCTTC 4 cut(s) 210, 500, 879, 888
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 3 cut(s) 67, 918, 945
BstDEI CTNAG 3 cut(s) 143, 327, 593
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 2 cut(s) 157, 584
BstFNI CGCG 1 cut(s) 910
BstKTI GATC 9 cut(s) 111, 245, 274, 318, 324, 430, 566, 599, 816
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
BstMWI GCNNNNNNNGC 1 cut(s) 953
BstSCI CCNGG 5 cut(s) 554, 618, 737, 738, 809
BstSLI GKGCMC 2 cut(s) 195, 958
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 2 cut(s) 456, 925
BstX2I RGATCY 3 cut(s) 321, 427, 563
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 3 cut(s) 321, 427, 563
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 2 cut(s) 604, 808
BtgI CCRYGG 1 cut(s) 936
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 157, 584
Cac8I GCNNGC 3 cut(s) 67, 918, 945
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 552, 807
Cfr9I CCCGGG 1 cut(s) 738
Csp6I GTAC 3 cut(s) 20, 85, 759
CviAII CATG 2 cut(s) 464, 600
CviQI GTAC 3 cut(s) 20, 85, 759
DdeI CTNAG 3 cut(s) 143, 327, 593
DpnI GATC 9 cut(s) 110, 244, 273, 317, 323, 429, 565, 598, 815
DpnII GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
DraIII CACNNNGTG 1 cut(s) 953
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 4 cut(s) 210, 500, 879, 888
EarI CTCTTC 4 cut(s) 210, 500, 879, 888
Eco130I CCWWGG 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 738
EcoRI GAATTC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 988
FaeI CATG 2 cut(s) 467, 603
FaiI YATR 8 cut(s) 187, 465, 601, 639, 768, 858, 960, 981
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FatI CATG 2 cut(s) 463, 599
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 129, 445, 911, 914
FokI GGATG 2 cut(s) 144, 591
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 4 cut(s) 129, 445, 911, 914
FspBI CTAG 5 cut(s) 281, 302, 431, 672, 747
GluI GCNGC 4 cut(s) 129, 445, 911, 914
HaeIII GGCC 2 cut(s) 604, 808
HapII CCGG 6 cut(s) 114, 555, 576, 619, 739, 811
Hin1II CATG 2 cut(s) 467, 603
HinfI GANTC 2 cut(s) 76, 539
HpaII CCGG 6 cut(s) 114, 555, 576, 619, 739, 811
HphI GGTGA 5 cut(s) 103, 200, 237, 325, 608
Hpy166II GTNNAC 2 cut(s) 883, 956
Hpy188I TCNGA 4 cut(s) 271, 328, 390, 544
Hpy188III TCNNGA 3 cut(s) 50, 319, 431
Hpy8I GTNNAC 2 cut(s) 883, 956
HpyAV CCTTC 3 cut(s) 342, 446, 491
HpyCH4III ACNGT 3 cut(s) 730, 940, 974
HpyCH4V TGCA 4 cut(s) 65, 931, 956, 979
HpyF10VI GCNNNNNNNGC 1 cut(s) 953
HpyF3I CTNAG 3 cut(s) 143, 327, 593
Hsp92II CATG 2 cut(s) 467, 603
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 3 cut(s) 544, 582, 740
Lsp1109I GCAGC 2 cut(s) 456, 925
MaeI CTAG 5 cut(s) 281, 302, 431, 672, 747
MaeIII GTNAC 2 cut(s) 656, 686
MalI GATC 9 cut(s) 110, 244, 273, 317, 323, 429, 565, 598, 815
MbiI CCGCTC 1 cut(s) 920
MboI GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
MboII GAAGA 9 cut(s) 197, 517, 530, 539, 558, 573, 860, 866, 905
MflI RGATCY 3 cut(s) 321, 427, 563
MhlI GDGCHC 4 cut(s) 195, 266, 874, 958
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 6 cut(s) 41, 237, 411, 770, 775, 793
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 8 cut(s) 172, 179, 213, 277, 501, 674, 856, 995
Mox20I TGGCCA 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 565
MscI TGGCCA 1 cut(s) 604
MseI TTAA 4 cut(s) 8, 44, 414, 773
Msp20I TGGCCA 1 cut(s) 604
MspI CCGG 6 cut(s) 114, 555, 576, 619, 739, 811
MspR9I CCNGG 5 cut(s) 556, 620, 739, 740, 811
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 1 cut(s) 953
NciI CCSGG 5 cut(s) 556, 620, 739, 740, 811
NdeII GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
NlaIII CATG 2 cut(s) 467, 603
NlaIV GGNNCC 3 cut(s) 194, 584, 809
NmuCI GTSAC 1 cut(s) 656
NspV TTCGAA 1 cut(s) 791
PciSI GCTCTTC 1 cut(s) 879
PcsI WCGNNNNNNNCGW 2 cut(s) 80, 89
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 579
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 4 cut(s) 130, 446, 912, 915
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 194, 584, 809
PspPI GGNCC 2 cut(s) 552, 807
PsuI RGATCY 3 cut(s) 321, 427, 563
RsaI GTAC 3 cut(s) 21, 86, 760
RsaNI GTAC 3 cut(s) 20, 85, 759
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 4 cut(s) 8, 44, 414, 773
SatI GCNGC 4 cut(s) 129, 445, 911, 914
Sau3AI GATC 9 cut(s) 108, 242, 271, 315, 321, 427, 563, 596, 813
Sau96I GGNCC 2 cut(s) 552, 807
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 5 cut(s) 556, 620, 739, 740, 811
SduI GDGCHC 4 cut(s) 195, 266, 874, 958
SetI ASST 9 cut(s) 149, 402, 668, 677, 737, 843, 856, 867, 987
SfuI TTCGAA 1 cut(s) 791
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 552
SmaI CCCGGG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 6 cut(s) 41, 237, 411, 770, 775, 793
SsiI CCGC 4 cut(s) 129, 533, 910, 920
SspMI CTAG 5 cut(s) 281, 302, 431, 672, 747
StyD4I CCNGG 5 cut(s) 554, 618, 737, 738, 809
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 3 cut(s) 730, 940, 974
TaqI TCGA 3 cut(s) 107, 409, 791
TasI AATT 6 cut(s) 41, 237, 411, 770, 775, 793
TauI GCSGC 2 cut(s) 131, 913
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 4 cut(s) 8, 44, 414, 773
Tru9I TTAA 4 cut(s) 8, 44, 414, 773
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 444, 913
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 5 cut(s) 309, 452, 465, 504, 783
TspGWI ACGGA 1 cut(s) 824
TspMI CCCGGG 1 cut(s) 738
Van91I CCANNNNNTGG 1 cut(s) 579
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 2 cut(s) 775, 793
XbaI TCTAGA 1 cut(s) 430
XmaI CCCGGG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 5 cut(s) 281, 302, 431, 672, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.