Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019424

Physical Location & Seq

Genomic Coordinates Forward (+)

74608690 .. 74609106

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATAGCTGCTCATGCTGCGGATCTAGCCAAAGATCATATGACTGCCATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAAGGTGGCCCATTTTTGCTCAATGTGTGGGCCAAAGTTCTGTTCTATGAAGATAACAGAGGATGTTAGGAAGTATGCTGAGGAGCATGGTTATGGAACTGCTGAGGAAGCTGTGAAACGTGGTATGGATGCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAACTGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAGTTATGTAAAATCCTCTGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

110

Amino Acids

11.86

Weight (kDa)

5.45

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068691
rosa_laevigata	RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha	Rh5AG450000 Rh5DG481600
rosa_wichuraiana	Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	80, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	8, 197
AluI	AGCT	2 cut(s)	8, 197
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	93, 116
ApeKI	GCWGC	3 cut(s)	8, 17, 239
ApoI	RAATTY	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	94, 116
AsuHPI	GGTGA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	83
BbvCI	CCTCAGC	2 cut(s)	165, 189
BbvI	GCAGC	2 cut(s)	4, 226
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	9, 18, 240
BlsI	GCNGC	3 cut(s)	10, 19, 241
BmgT120I	GGNCC	2 cut(s)	94, 116
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	165, 189
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 324
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	154, 220
BseLI	CCNNNNNNNGG	2 cut(s)	80, 324
BseMII	CTCAG	4 cut(s)	156, 180, 219, 312
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	4, 226
BshFI	GGCC	2 cut(s)	95, 118
BshNI	GGYRCC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	80, 324
BsnI	GGCC	2 cut(s)	95, 118
Bsp143I	GATC	2 cut(s)	22, 34
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	95, 118
BspCNI	CTCAG	4 cut(s)	157, 181, 220, 313
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	22, 34
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	4 cut(s)	165, 189, 228, 321
BstENI	CCTNNNNNAGG	2 cut(s)	78, 322
BstF5I	GGATG	2 cut(s)	154, 220
BstKTI	GATC	2 cut(s)	25, 37
BstMBI	GATC	2 cut(s)	22, 34
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 17, 26, 83, 92, 194, 224
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	4, 226
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	95, 118
BtsCI	GGATG	2 cut(s)	154, 220
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	94, 116
CviAII	CATG	6 cut(s)	14, 49, 59, 173, 220, 269
CviJI	RGCY	5 cut(s)	8, 29, 95, 118, 197
CviKI_1	RGCY	5 cut(s)	8, 29, 95, 118, 197
DdeI	CTNAG	4 cut(s)	165, 189, 228, 321
DpnI	GATC	2 cut(s)	24, 36
DpnII	GATC	2 cut(s)	22, 34
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	2 cut(s)	78, 322
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	17, 52, 62, 176, 223, 272
FatI	CATG	6 cut(s)	13, 48, 58, 172, 219, 268
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	9, 18, 240
FokI	GGATG	2 cut(s)	161, 227
Fsp4HI	GCNGC	3 cut(s)	9, 18, 240
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	3 cut(s)	9, 18, 240
HaeIII	GGCC	2 cut(s)	95, 118
Hin1II	CATG	6 cut(s)	17, 52, 62, 176, 223, 272
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	64, 74
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 17, 26, 83, 92, 194, 224
HpyF3I	CTNAG	4 cut(s)	165, 189, 228, 321
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	6 cut(s)	17, 52, 62, 176, 223, 272
Kzo9I	GATC	2 cut(s)	22, 34
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	83, 87, 312
Lsp1109I	GCAGC	2 cut(s)	4, 226
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	205
MalI	GATC	2 cut(s)	24, 36
MboI	GATC	2 cut(s)	22, 34
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	2 cut(s)	276, 288
MnlI	CCTC	5 cut(s)	139, 160, 184, 318, 328
MslI	CAYNNNNRTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	7 cut(s)	14, 17, 26, 83, 92, 194, 224
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	2 cut(s)	22, 34
NlaIII	CATG	6 cut(s)	17, 52, 62, 176, 223, 272
NlaIV	GGNNCC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	10, 19, 241
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	94, 116
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	3 cut(s)	9, 18, 240
Sau3AI	GATC	2 cut(s)	22, 34
Sau96I	GGNCC	2 cut(s)	94, 116
SetI	ASST	6 cut(s)	10, 85, 93, 199, 208, 329
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	276, 288
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	208
TasI	AATT	2 cut(s)	276, 288
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	8, 17, 239
TspDTI	ATGAA	2 cut(s)	78, 149
TspRI	CASTG	1 cut(s)	262
XagI	CCTNNNNNAGG	2 cut(s)	78, 322
XapI	RAATTY	1 cut(s)	288
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.