Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019424

Physical Location & Seq

Genomic Coordinates Forward (+)

77220654 .. 77221421

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG450000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACCAGTTTGCTTTGTCTCTAGACCCTATGATTGCGATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAAAGTGGCCCATTTTTGCTCAATGTGTGGGCCAAAATTCTGTTCTATGAAGATAACAGAGGATGTTAGGAAGTATGCTGAGGAGCATGGTTATGGAACTGCCGAGGAAGCTGTGAAGCGTGGTATGGATCCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAACAGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAACCTCAGAGAGGTGAAGGATCAAGTGAATGGTTATAACCTGTTCGACAACCCTGGAGGCTTTCGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

121

Amino Acids

13.36

Weight (kDa)

4.9

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068691
rosa_laevigata	RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha	Rh5AG450000 Rh5DG481600
rosa_wichuraiana	Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	74
AclWI	GGATC	3 cut(s)	200, 213, 321
AcsI	RAATTY	2 cut(s)	113, 279
AfiI	CCNNNNNNNGG	2 cut(s)	71, 304
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	3 cut(s)	200, 213, 321
AoxI	GGCC	2 cut(s)	84, 107
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	113, 279
AspS9I	GGNCC	3 cut(s)	4, 85, 107
AsuHPI	GGTGA	2 cut(s)	275, 319
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	66
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 85, 107
BmiI	GGNNCC	2 cut(s)	76, 207
BmrFI	CCNGG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	180, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 304
Bse1I	ACTGG	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	180, 346
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	71, 304
BseMII	CTCAG	3 cut(s)	147, 210, 313
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	86, 109
BshNI	GGYRCC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	71, 304
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	86, 109
Bsp143I	GATC	2 cut(s)	205, 313
BspANI	GGCC	2 cut(s)	86, 109
BspCNI	CTCAG	3 cut(s)	148, 211, 312
BspLI	GGNNCC	2 cut(s)	76, 207
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	3 cut(s)	200, 213, 321
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	180, 346
BssMI	GATC	2 cut(s)	205, 313
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	156, 219, 299
BstENI	CCTNNNNNAGG	2 cut(s)	69, 302
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	208, 316
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	205, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 185
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	86, 109
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	4, 85, 107
CviAII	CATG	4 cut(s)	50, 164, 211, 260
CviJI	RGCY	4 cut(s)	86, 109, 188, 354
CviKI_1	RGCY	4 cut(s)	86, 109, 188, 354
DdeI	CTNAG	3 cut(s)	156, 219, 299
DpnI	GATC	2 cut(s)	207, 315
DpnII	GATC	2 cut(s)	205, 313
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	2 cut(s)	69, 302
EcoRII	CCWGG	1 cut(s)	346
FaeI	CATG	4 cut(s)	53, 167, 214, 263
FatI	CATG	4 cut(s)	49, 163, 210, 259
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	86, 109
Hin1II	CATG	4 cut(s)	53, 167, 214, 263
HphI	GGTGA	2 cut(s)	275, 319
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	55, 65, 304
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 185
HpyF3I	CTNAG	3 cut(s)	156, 219, 299
Hsp92II	CATG	4 cut(s)	53, 167, 214, 263
Kzo9I	GATC	2 cut(s)	205, 313
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	20, 74, 78, 303, 333, 347, 360
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	23
MalI	GATC	2 cut(s)	207, 315
MboI	GATC	2 cut(s)	205, 313
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	3 cut(s)	113, 267, 279
MnlI	CCTC	6 cut(s)	130, 151, 175, 298, 308, 344
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 185
NdeII	GATC	2 cut(s)	205, 313
NlaIII	CATG	4 cut(s)	53, 167, 214, 263
NlaIV	GGNNCC	2 cut(s)	76, 207
NmeAIII	GCCGAG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	76, 207
PspPI	GGNCC	3 cut(s)	4, 85, 107
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	205, 313
Sau96I	GGNCC	3 cut(s)	4, 85, 107
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	5 cut(s)	76, 190, 300, 309, 336
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	3 cut(s)	113, 267, 279
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	113, 267, 279
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	69, 140
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	2 cut(s)	69, 302
XapI	RAATTY	2 cut(s)	113, 279
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.