Rw0G009860

Phosphomethylpyrimidine synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00403
Physical Location & Seq
Forward (+)
664 .. 2055
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009860.1

Sequence Viewer

Length: 1053 bp
ATGAACTCCGTCGTCTTCGGCTTCTCCAGCTTCTCAAACTCATCGCTAAGTATCCTCCACCACAATCATGTTCTCCGCCGCGCTCGCCACCGCCGTCGAAATCGCCAGCCTGATCTTCTCCTTGCGGTTAATCTTGATGCTCCAATCCCTGGGCTTGGGCCCGAACACGACTCCTCCGTCGGGTCGAACCCTGCCTGGCCCGACCGGTCTTCTTCTGCGGCCTCGCCACGGGTGCGGGAGCTGGATCCAGAGTTTGTGAGATCAGAAGTGGCTCGTGGGAGGGCAATTATCCCTTCCAATAAGAAGCACTTGGAGCTGGAGCCAATGATCGTAGGGAGAAAGTTTCTGGTCGAAGTTAATGCAAACATAGGAAACTCTGCTGTTGCCAGCTCTATTGAAGAGGAAGTTTATAAGGTCCACTGGGCAACTATGTGGGGTGCTGACACTATTGTGGACCTCTCTACAGGTCGCCATATCCATGAGACCCGTGAGTGGATCCTACCGCCTTTCTACACTCTCGGTCCTTTGACAACTGATATTGCTCCTGGATATGATCACATCACCTCTGCCATTGGTGCTCTAGGCACTGCCCTTCTCTGCTATGTAACCCCTAAAGAGCATCTTGGATTGCCCAATCGGGATGATGTGAAGGCTGGAGTTATAGCATATAAGATAGCTGCTCATGCTGCTGATCTAGCCAAAGGTCATCCACATGCTCAAGAGTGGGATGACGCATTAAACAAGGCAAGATTTGAGTTCCGGTGGATGGATCAGTTTGCTTTGTCTCTAGACCCTATGACTGCCATGTCCTTCCATGATGAAACCCTGCCCGCAGAAGGTGCCAAGGTGGCCCATTTTTGCTCAATGTGCGGGCCAAAGTTCTGTTCTATGAAGATAACAGAGGATATTAGGAAGTATGCTGAGGAGCATGGTTATGGAACTGCCGAGGAAGCTTTTCTTGCTGCCAAAAAAACTGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAGTTACGTAAAATCCTCGGAGAGGTGA

Protein Analysis

350

Amino Acids

38.7

Weight (kDa)

6.13

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiC_Rad_SAM PF01964 80 - 167 7.1e-26 Radical SAM ThiC family
ThiC_Rad_SAM PF01964 169 - 301 3.1e-54 Radical SAM ThiC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019424)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0068691
rosa_laevigata RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha Rh5AG450000 Rh5DG481600
rosa_wichuraiana Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AasI GACNNNNNNGTC 2 cut(s) 176, 805
AccB1I GGYRCC 1 cut(s) 839
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 1 cut(s) 81
AciI CCGC 9 cut(s) 76, 79, 91, 125, 218, 235, 503, 831, 870
AclWI GGATC 5 cut(s) 239, 252, 490, 503, 777
AcsI RAATTY 1 cut(s) 1011
AfiI CCNNNNNNNGG 8 cut(s) 149, 155, 180, 228, 492, 766, 836, 1047
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 3 cut(s) 148, 194, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 6 cut(s) 30, 241, 316, 390, 677, 953
AluI AGCT 6 cut(s) 30, 241, 316, 390, 677, 953
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 476, 789
AlwI GGATC 5 cut(s) 239, 252, 490, 503, 777
AoxI GGCC 5 cut(s) 158, 197, 219, 849, 872
ApaI GGGCCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 677, 686, 962
ApoI RAATTY 1 cut(s) 1011
ArsI GACNNNNNNTTYG 2 cut(s) 960, 992
AsiGI ACCGGT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 954
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 8 cut(s) 158, 159, 198, 415, 454, 521, 850, 872
AsuHPI GGTGA 2 cut(s) 553, 1007
AvaII GGWCC 3 cut(s) 415, 454, 521
BaeGI GKGCMC 1 cut(s) 162
BamHI GGATCC 2 cut(s) 244, 495
BanI GGYRCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 7, 201
Bbv12I GWGCWC 1 cut(s) 580
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 3 cut(s) 664, 673, 949
BccI CCATC 1 cut(s) 760
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 3 cut(s) 150, 196, 546
BciVI GTATCC 1 cut(s) 62
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 476, 789
BfaI CTAG 3 cut(s) 581, 695, 788
BfmI CTRYAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 848
BisI GCNGC 5 cut(s) 79, 219, 678, 687, 963
BlsI GCNGC 5 cut(s) 80, 220, 679, 688, 964
Bme1390I CCNGG 3 cut(s) 150, 196, 546
Bme18I GGWCC 3 cut(s) 415, 454, 521
BmgT120I GGNCC 8 cut(s) 158, 159, 198, 415, 454, 521, 850, 872
BmiI GGNNCC 5 cut(s) 160, 246, 321, 497, 841
BmrFI CCNGG 3 cut(s) 150, 196, 546
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 2 cut(s) 127, 628
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 2 cut(s) 7, 201
BpmI CTGGAG 3 cut(s) 10, 338, 675
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 702
BsaAI YACGTR 1 cut(s) 1033
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 6 cut(s) 148, 149, 227, 843, 945, 1041
BsaWI WCCGGW 2 cut(s) 204, 759
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 8 cut(s) 149, 155, 180, 228, 492, 766, 836, 1047
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 425
BseBI CCWGG 3 cut(s) 150, 196, 546
BseDI CCNNGG 6 cut(s) 148, 149, 227, 843, 945, 1041
BseGI GGATG 4 cut(s) 646, 706, 733, 771
BseLI CCNNNNNNNGG 8 cut(s) 149, 155, 180, 228, 492, 766, 836, 1047
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 163, 938
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 3 cut(s) 664, 673, 949
Bsh1236I CGCG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 5 cut(s) 160, 199, 221, 851, 874
BshNI GGYRCC 1 cut(s) 839
BshTI ACCGGT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 2 cut(s) 205, 760
BslI CCNNNNNNNGG 8 cut(s) 149, 155, 180, 228, 492, 766, 836, 1047
BsmAI GTCTC 2 cut(s) 476, 789
BsnI GGCC 5 cut(s) 160, 199, 221, 851, 874
Bso31I GGTCTC 1 cut(s) 476
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 162, 580
Bsp143I GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
BspACI CCGC 9 cut(s) 76, 79, 91, 125, 218, 235, 503, 831, 870
BspANI GGCC 5 cut(s) 160, 199, 221, 851, 874
BspCNI CTCAG 1 cut(s) 913
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 5 cut(s) 160, 246, 321, 497, 841
BspPI GGATC 5 cut(s) 239, 252, 490, 503, 777
BspT107I GGYRCC 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 6 cut(s) 148, 149, 227, 843, 945, 1041
BssMI GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 150, 196, 546
Bst4CI ACNGT 1 cut(s) 976
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 839
BstBAI YACGTR 1 cut(s) 1033
BstC8I GCNNGC 5 cut(s) 85, 107, 388, 831, 872
BstDEI CTNAG 2 cut(s) 47, 921
BstDSI CCRYGG 1 cut(s) 227
BstENI CCTNNNNNAGG 1 cut(s) 1045
BstF5I GGATG 4 cut(s) 646, 706, 733, 771
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 8 cut(s) 115, 247, 263, 330, 498, 556, 694, 772
BstMAI GTCTC 2 cut(s) 476, 789
BstMBI GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
BstMCI CGRYCG 1 cut(s) 205
BstNI CCWGG 3 cut(s) 150, 196, 546
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 148, 194, 544
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 162
BstSNI TACGTA 1 cut(s) 1033
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 664, 673, 949
BstV2I GAAGAC 2 cut(s) 7, 201
BstX2I RGATCY 2 cut(s) 244, 495
BstYI RGATCY 2 cut(s) 244, 495
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 5 cut(s) 160, 199, 221, 851, 874
BtgI CCRYGG 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 646, 706, 733, 771
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 418, 585, 985
Cac8I GCNNGC 5 cut(s) 85, 107, 388, 831, 872
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 8 cut(s) 158, 159, 198, 415, 454, 521, 850, 872
CseI GACGC 1 cut(s) 740
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 8 cut(s) 68, 479, 683, 713, 805, 815, 929, 992
DdeI CTNAG 2 cut(s) 47, 921
DpnI GATC 8 cut(s) 114, 246, 262, 329, 497, 555, 693, 771
DpnII GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
DrdI GACNNNNNNGTC 2 cut(s) 176, 805
DseDI GACNNNNNNGTC 2 cut(s) 176, 805
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 65
Eco105I TACGTA 1 cut(s) 1033
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 3 cut(s) 415, 454, 521
EcoNI CCTNNNNNAGG 1 cut(s) 1045
EcoRII CCWGG 3 cut(s) 148, 194, 544
EcoT14I CCWWGG 1 cut(s) 843
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 8 cut(s) 71, 482, 686, 716, 808, 818, 932, 995
FalI AAGNNNNNCTT 6 cut(s) 293, 325, 606, 638, 942, 974
FatI CATG 8 cut(s) 67, 478, 682, 712, 804, 814, 928, 991
FauI CCCGC 3 cut(s) 228, 838, 863
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 5 cut(s) 79, 219, 678, 687, 963
FokI GGATG 4 cut(s) 653, 693, 740, 778
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 5 cut(s) 79, 219, 678, 687, 963
FspBI CTAG 3 cut(s) 581, 695, 788
GlaI GCGC 1 cut(s) 82
GluI GCNGC 5 cut(s) 79, 219, 678, 687, 963
GsuI CTGGAG 3 cut(s) 10, 338, 675
HaeIII GGCC 5 cut(s) 160, 199, 221, 851, 874
HapII CCGG 2 cut(s) 205, 760
HgaI GACGC 1 cut(s) 740
HhaI GCGC 1 cut(s) 83
Hin1II CATG 8 cut(s) 71, 482, 686, 716, 808, 818, 932, 995
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 1 cut(s) 170
HpaII CCGG 2 cut(s) 205, 760
HphI GGTGA 2 cut(s) 553, 1007
Hpy166II GTNNAC 2 cut(s) 418, 454
Hpy188I TCNGA 2 cut(s) 265, 1045
Hpy188III TCNNGA 5 cut(s) 134, 248, 638, 719, 788
Hpy8I GTNNAC 2 cut(s) 418, 454
Hpy99I CGWCG 3 cut(s) 14, 99, 182
HpyAV CCTTC 5 cut(s) 303, 602, 643, 820, 830
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 47, 921
HpySE526I ACGT 1 cut(s) 1032
Hsp92II CATG 8 cut(s) 71, 482, 686, 716, 808, 818, 932, 995
HspAI GCGC 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
LmnI GCTCC 6 cut(s) 145, 238, 313, 319, 547, 925
Lsp1109I GCAGC 3 cut(s) 664, 673, 949
LweI GCATC 2 cut(s) 127, 628
MaeI CTAG 3 cut(s) 581, 695, 788
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 2 cut(s) 604, 1028
MalI GATC 8 cut(s) 114, 246, 262, 329, 497, 555, 693, 771
MboI GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
MboII GAAGA 6 cut(s) 7, 107, 201, 204, 410, 904
MflI RGATCY 2 cut(s) 244, 495
MhlI GDGCHC 2 cut(s) 162, 580
MluCI AATT 3 cut(s) 285, 999, 1011
MlyI GAGTC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 954
MseI TTAA 3 cut(s) 129, 357, 737
MslI CAYNNNNRTG 5 cut(s) 66, 449, 477, 711, 933
MspI CCGG 2 cut(s) 205, 760
MspR9I CCNGG 3 cut(s) 150, 196, 546
MvaI CCWGG 3 cut(s) 150, 196, 546
MvnI CGCG 1 cut(s) 81
NdeII GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
NlaIII CATG 8 cut(s) 71, 482, 686, 716, 808, 818, 932, 995
NlaIV GGNNCC 5 cut(s) 160, 246, 321, 497, 841
NmeAIII GCCGAG 1 cut(s) 970
NspI RCATGY 1 cut(s) 716
OliI CACNNNNGTG 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 91, 174
PdmI GAANNNNTTC 1 cut(s) 954
PflMI CCANNNNNTGG 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 544
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 5 cut(s) 80, 220, 679, 688, 964
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 1033
PsiI TTATAA 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 148, 194, 544
PspGI CCWGG 3 cut(s) 148, 194, 544
PspN4I GGNNCC 5 cut(s) 160, 246, 321, 497, 841
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 8 cut(s) 158, 159, 198, 415, 454, 521, 850, 872
PsuI RGATCY 2 cut(s) 244, 495
RseI CAYNNNNRTG 5 cut(s) 66, 449, 477, 711, 933
SaqAI TTAA 3 cut(s) 129, 357, 737
SatI GCNGC 5 cut(s) 79, 219, 678, 687, 963
Sau3AI GATC 8 cut(s) 112, 244, 260, 327, 495, 553, 691, 769
Sau96I GGNCC 8 cut(s) 158, 159, 198, 415, 454, 521, 850, 872
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 150, 196, 546
SduI GDGCHC 2 cut(s) 162, 580
SfaNI GCATC 2 cut(s) 127, 628
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 3 cut(s) 415, 454, 521
SmiMI CAYNNNNRTG 5 cut(s) 66, 449, 477, 711, 933
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
SnaBI TACGTA 1 cut(s) 1033
Sse9I AATT 3 cut(s) 285, 999, 1011
SsiI CCGC 9 cut(s) 76, 79, 91, 125, 218, 235, 503, 831, 870
SspMI CTAG 3 cut(s) 581, 695, 788
StyD4I CCNGG 3 cut(s) 148, 194, 544
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 1 cut(s) 976
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 3 cut(s) 97, 185, 351
TaqII GACCGA 1 cut(s) 509
TasI AATT 3 cut(s) 285, 999, 1011
TauI GCSGC 2 cut(s) 81, 221
Tru1I TTAA 3 cut(s) 129, 357, 737
Tru9I TTAA 3 cut(s) 129, 357, 737
TscAI CASTG 3 cut(s) 425, 592, 985
TseI GCWGC 3 cut(s) 677, 686, 962
TspDTI ATGAA 3 cut(s) 17, 834, 905
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 425, 592, 985
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 415, 454, 521
XagI CCTNNNNNAGG 1 cut(s) 1045
XapI RAATTY 1 cut(s) 1011
XbaI TCTAGA 1 cut(s) 787
XceI RCATGY 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 3 cut(s) 581, 695, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.