Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019424

Physical Location & Seq

Genomic Coordinates Forward (+)

75896534 .. 75911335

Gene Structure 14802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATGTGAATAAAAATAGGAGCAGATCGATCATATGTCCTAAGGCCACTTTAACTTTTGATCCTCCAGCAACCAATTCAGAGAAAGCCAACGTACCCAACCTACCGAGGCATACAATTGATCCTTTGACAACTGATATTGCTCCTGGATATGATCACATCACCTCTGCCATTGGTGCTGCAAATATTGGTGCTCTAGGCACTGCCCTTCTCTGCTATGTAACCCCTAAAGAGCATCTTGGATTGCCCAATCGGGATGATGTGAAGGCTGGAGTTATAGCATATAAGATAGCTGCTCATGCTGCTGATCTAACCAAAGGTCATCCACATGCTCAAGAGTGGGATGACGCATTAAGCAAGGCAAGATTCGAGTTCCGGTGGATGGACCAGTTTGCTTTGTCTCTAGACCCTATGACTGCCATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAAGGTGGCCCATTTTTGCTCAATGTGTGGGCCAAAGTTCTGTTCTATGAAGATAACAGAGGATGTTAGGAAGTATGCGGAGGAGCATGGTTATGGAACTGCCGAGGAAGCTGTGAAGCATGGTATGGATGCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAACTGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAGTTATGTAAAATCCTCTGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

233

Amino Acids

25.37

Weight (kDa)

5.86

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiC_Rad_SAM	PF01964	28 - 173	1.4e-56	Radical SAM ThiC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068691
rosa_laevigata	RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha	Rh5AG450000 Rh5DG481600
rosa_wichuraiana	Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	455
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	2 cut(s)	56, 116
AcsI	RAATTY	1 cut(s)	660
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	382, 452, 696
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	2 cut(s)	293, 569
AluI	AGCT	2 cut(s)	293, 569
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	56, 116
AoxI	GGCC	3 cut(s)	45, 465, 488
ApeKI	GCWGC	4 cut(s)	179, 293, 302, 611
ApoI	RAATTY	1 cut(s)	660
AspS9I	GGNCC	3 cut(s)	385, 466, 488
AsuHPI	GGTGA	2 cut(s)	154, 656
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	166, 280, 289, 598
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	197, 404
BfmI	CTRYAG	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	4 cut(s)	180, 294, 303, 612
BlsI	GCNGC	4 cut(s)	181, 295, 304, 613
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	385, 466, 488
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	244, 577
BpmI	CTGGAG	2 cut(s)	51, 291
BpuEI	CTTGAG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	107, 459, 561
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 452, 696
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	107, 459, 561
BseGI	GGATG	6 cut(s)	262, 322, 349, 387, 526, 592
BseLI	CCNNNNNNNGG	3 cut(s)	382, 452, 696
BseMII	CTCAG	2 cut(s)	591, 684
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	4 cut(s)	166, 280, 289, 598
BshFI	GGCC	3 cut(s)	47, 467, 490
BshNI	GGYRCC	1 cut(s)	455
BshVI	ATCGAT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	382, 452, 696
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	47, 467, 490
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	3 cut(s)	47, 467, 490
BspCNI	CTCAG	2 cut(s)	592, 685
BspDI	ATCGAT	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	56, 116
BspT107I	GGYRCC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	107, 459, 561
BssMI	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	42, 600, 693
BstENI	CCTNNNNNAGG	2 cut(s)	450, 694
BstF5I	GGATG	6 cut(s)	262, 322, 349, 387, 526, 592
BstKTI	GATC	6 cut(s)	29, 33, 64, 124, 157, 310
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 299, 302, 455, 464, 566, 596
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	166, 280, 289, 598
Bsu15I	ATCGAT	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	47, 467, 490
BsuTUI	ATCGAT	1 cut(s)	29
BtsCI	GGATG	6 cut(s)	262, 322, 349, 387, 526, 592
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 634
Cac8I	GCNNGC	1 cut(s)	447
Cfr13I	GGNCC	3 cut(s)	385, 466, 488
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	8 cut(s)	299, 329, 421, 431, 545, 578, 592, 641
CviJI	RGCY	7 cut(s)	47, 89, 269, 293, 467, 490, 569
CviKI_1	RGCY	7 cut(s)	47, 89, 269, 293, 467, 490, 569
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	42, 600, 693
DpnI	GATC	6 cut(s)	28, 32, 63, 123, 156, 309
DpnII	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	42
EcoNI	CCTNNNNNAGG	2 cut(s)	450, 694
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	8 cut(s)	302, 332, 424, 434, 548, 581, 595, 644
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	8 cut(s)	298, 328, 420, 430, 544, 577, 591, 640
FauNDI	CATATG	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	180, 294, 303, 612
FokI	GGATG	6 cut(s)	269, 309, 356, 394, 533, 599
Fsp4HI	GCNGC	4 cut(s)	180, 294, 303, 612
FspBI	CTAG	2 cut(s)	197, 404
GluI	GCNGC	4 cut(s)	180, 294, 303, 612
GsuI	CTGGAG	2 cut(s)	51, 291
HaeIII	GGCC	3 cut(s)	47, 467, 490
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	8 cut(s)	302, 332, 424, 434, 548, 581, 595, 644
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	154, 656
Hpy188I	TCNGA	2 cut(s)	82, 694
Hpy188III	TCNNGA	3 cut(s)	254, 335, 404
HpyAV	CCTTC	4 cut(s)	218, 259, 436, 446
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	182, 449
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 299, 302, 455, 464, 566, 596
HpyF3I	CTNAG	3 cut(s)	42, 600, 693
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	8 cut(s)	302, 332, 424, 434, 548, 581, 595, 644
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
LmnI	GCTCC	3 cut(s)	21, 148, 541
LpnPI	CCDG	9 cut(s)	81, 132, 159, 255, 389, 401, 455, 459, 684
Lsp1109I	GCAGC	4 cut(s)	166, 280, 289, 598
LweI	GCATC	2 cut(s)	244, 577
MaeI	CTAG	2 cut(s)	197, 404
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	6 cut(s)	28, 32, 63, 123, 156, 309
MboI	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
MboII	GAAGA	1 cut(s)	520
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	4 cut(s)	76, 117, 648, 660
MnlI	CCTC	8 cut(s)	75, 102, 175, 511, 532, 556, 690, 700
MseI	TTAA	2 cut(s)	53, 353
MslI	CAYNNNNRTG	2 cut(s)	327, 549
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	7 cut(s)	176, 299, 302, 455, 464, 566, 596
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
NlaIII	CATG	8 cut(s)	302, 332, 424, 434, 548, 581, 595, 644
NlaIV	GGNNCC	1 cut(s)	457
NmeAIII	GCCGAG	1 cut(s)	586
NspI	RCATGY	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	181, 295, 304, 613
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	385, 466, 488
PstI	CTGCAG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	327, 549
SaqAI	TTAA	2 cut(s)	53, 353
SatI	GCNGC	4 cut(s)	180, 294, 303, 612
Sau3AI	GATC	6 cut(s)	26, 30, 61, 121, 154, 307
Sau96I	GGNCC	3 cut(s)	385, 466, 488
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	96, 105, 167, 295, 322, 457, 465, 571, 701
SfaNI	GCATC	2 cut(s)	244, 577
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	327, 549
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	76, 117, 648, 660
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	197, 404
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	29, 369
TasI	AATT	4 cut(s)	76, 117, 648, 660
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	2 cut(s)	53, 353
Tru9I	TTAA	2 cut(s)	53, 353
TscAI	CASTG	2 cut(s)	208, 634
TseI	GCWGC	4 cut(s)	179, 293, 302, 611
TspDTI	ATGAA	3 cut(s)	17, 450, 521
TspRI	CASTG	2 cut(s)	208, 634
VpaK11BI	GGWCC	1 cut(s)	385
XagI	CCTNNNNNAGG	2 cut(s)	450, 694
XapI	RAATTY	1 cut(s)	660
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	2 cut(s)	197, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.