Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019424

Physical Location & Seq

Genomic Coordinates Forward (+)

74663053 .. 74665998

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACCTCGGATCGGAGACGAGCTCCGGGCAAAAGCGTCCATAGTGGGGAAGATGAGCGCCAACAGACTCTGAATGTTACTAAAGAGAAAACCTTGGGCGGAAGATCGAAATCTCTTTCATTTAAGCCAGTCAATCCCACATTTGCTCCTCCTCCGAAAAGCCCCTCATTCAACGTTCTGGTCATCATTAATCAACAAGGGCTTGCTGCTGCTGCTCCACCTCCACCTCCACCTCCACCTCATGCCATTTTCATTTTCATCATCAGCAGCATGAGCAGCTATCTTATATGCTATAACTCCAGCCTTCATATCATCCCGATTGGGCAATCCAAGATTCTCTTTAGGGGTAACTTATGCGAGGTTAGATTTCCTAGGCTTGGCGACTACGGCGGTGGCGACAACACTTTCTCTTCCTTGTGGGAAGCTCTGCCTTCTGTTGCCGTCGTCGGCGGCCAGGCTGGAGTTATAGCATATAAGATAGCTGCTCATGCTGCTGATCTAGCCAAAGGTCATCCACATGCTCAAGAGTGGGATGACGCATTAAGCAAGGCAAGATTTGAGTTCCGGTGGATGGACCAGTTTGCTTTGTCTTTAGACCCTATGACTGCCATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAACGTGTCCCACTTTTGCTCAATGTGTGGGCCAAAGTTCTGTTCTATGAAGATAACAATGGATGTTAGGAAGTATGCTGAGGAGCATGGTTATGGAATTGTCGAGGAAGCTGTGAAGCGTGGTATGGATCCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAAGAAAACTGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

293

Amino Acids

32.06

Weight (kDa)

8.82

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiC_Rad_SAM	PF01964	152 - 235	3.7e-24	Radical SAM ThiC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068691
rosa_laevigata	RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha	Rh5AG450000 Rh5DG481600
rosa_wichuraiana	Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	644
AciI	CCGC	3 cut(s)	99, 390, 450
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	3 cut(s)	18, 770, 783
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	854
AfiI	CCNNNNNNNGG	5 cut(s)	12, 46, 377, 571, 641
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	453
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	5 cut(s)	23, 279, 425, 482, 758
AluI	AGCT	5 cut(s)	23, 279, 425, 482, 758
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	18, 770, 783
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	451, 677
ApeKI	GCWGC	8 cut(s)	206, 209, 212, 267, 276, 482, 491, 800
ApoI	RAATTY	1 cut(s)	854
AseI	ATTAAT	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	574, 677
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	8 cut(s)	193, 196, 199, 279, 288, 469, 478, 787
BccI	CCATC	1 cut(s)	565
BceAI	ACGGC	2 cut(s)	403, 425
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	372, 500
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	9 cut(s)	207, 210, 213, 268, 277, 451, 483, 492, 801
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	9 cut(s)	208, 211, 214, 269, 278, 452, 484, 493, 802
Bme1390I	CCNGG	2 cut(s)	27, 455
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	574, 677
BmiI	GGNNCC	2 cut(s)	646, 777
BmrFI	CCNGG	2 cut(s)	27, 455
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	2 cut(s)	283, 480
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	6, 93, 371
BsaWI	WCCGGW	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 46, 377, 571, 641
Bse1I	ACTGG	2 cut(s)	128, 577
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	6, 93, 371
BseGI	GGATG	5 cut(s)	312, 511, 538, 576, 715
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	5 cut(s)	12, 46, 377, 571, 641
BseMII	CTCAG	2 cut(s)	717, 780
BseNI	ACTGG	2 cut(s)	128, 577
BseRI	GAGGAG	3 cut(s)	138, 141, 743
BseXI	GCAGC	8 cut(s)	193, 196, 199, 279, 288, 469, 478, 787
BshFI	GGCC	2 cut(s)	453, 679
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	26, 565
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	5 cut(s)	12, 46, 377, 571, 641
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	453, 679
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	10, 104, 496, 775
BspACI	CCGC	3 cut(s)	99, 390, 450
BspANI	GGCC	2 cut(s)	453, 679
BspCNI	CTCAG	2 cut(s)	718, 781
BspLI	GGNNCC	2 cut(s)	646, 777
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	3 cut(s)	18, 770, 783
BspT107I	GGYRCC	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	128, 577
BssECI	CCNNGG	3 cut(s)	6, 93, 371
BssMI	GATC	4 cut(s)	10, 104, 496, 775
BssT1I	CCWWGG	2 cut(s)	93, 371
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	204, 636
BstDEI	CTNAG	2 cut(s)	726, 789
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	5 cut(s)	312, 511, 538, 576, 715
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	4 cut(s)	13, 107, 499, 778
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	10, 104, 496, 775
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 273, 276, 387, 488, 491, 500, 644
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	25, 453
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	8 cut(s)	193, 196, 199, 279, 288, 469, 478, 787
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	2 cut(s)	453, 679
BtsCI	GGATG	5 cut(s)	312, 511, 538, 576, 715
BtsIMutI	CAGTG	1 cut(s)	828
Cac8I	GCNNGC	2 cut(s)	204, 636
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	574, 677
CseI	GACGC	2 cut(s)	25, 545
CviAII	CATG	9 cut(s)	242, 271, 488, 518, 610, 620, 734, 781, 835
DdeI	CTNAG	2 cut(s)	726, 789
DpnI	GATC	4 cut(s)	12, 106, 498, 777
DpnII	GATC	4 cut(s)	10, 104, 496, 775
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	93, 371
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	93, 371
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	93, 371
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	9 cut(s)	245, 274, 491, 521, 613, 623, 737, 784, 838
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	9 cut(s)	241, 270, 487, 517, 609, 619, 733, 780, 834
Fnu4HI	GCNGC	9 cut(s)	207, 210, 213, 268, 277, 451, 483, 492, 801
FokI	GGATG	5 cut(s)	299, 498, 545, 583, 722
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	9 cut(s)	207, 210, 213, 268, 277, 451, 483, 492, 801
FspBI	CTAG	2 cut(s)	372, 500
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	9 cut(s)	207, 210, 213, 268, 277, 451, 483, 492, 801
GsuI	CTGGAG	2 cut(s)	283, 480
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	453, 679
HapII	CCGG	2 cut(s)	26, 565
HgaI	GACGC	2 cut(s)	25, 545
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	9 cut(s)	245, 274, 491, 521, 613, 623, 737, 784, 838
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	67, 334
HpaII	CCGG	2 cut(s)	26, 565
HphI	GGTGA	1 cut(s)	850
Hpy188I	TCNGA	4 cut(s)	10, 15, 72, 156
Hpy188III	TCNNGA	2 cut(s)	316, 524
Hpy99I	CGWCG	2 cut(s)	446, 449
HpyAV	CCTTC	4 cut(s)	314, 441, 625, 635
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4IV	ACGT	2 cut(s)	174, 651
HpyCH4V	TGCA	1 cut(s)	638
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 273, 276, 387, 488, 491, 500, 644
HpyF3I	CTNAG	2 cut(s)	726, 789
HpySE526I	ACGT	2 cut(s)	174, 651
Hsp92II	CATG	9 cut(s)	245, 274, 491, 521, 613, 623, 737, 784, 838
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	10, 104, 496, 775
LmnI	GCTCC	4 cut(s)	28, 151, 220, 730
Lsp1109I	GCAGC	8 cut(s)	193, 196, 199, 279, 288, 469, 478, 787
MaeI	CTAG	2 cut(s)	372, 500
MaeII	ACGT	2 cut(s)	174, 651
MaeIII	GTNAC	2 cut(s)	76, 347
MalI	GATC	4 cut(s)	12, 106, 498, 777
MboI	GATC	4 cut(s)	10, 104, 496, 775
MboII	GAAGA	4 cut(s)	62, 114, 402, 709
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	744, 842, 854
MlyI	GAGTC	1 cut(s)	61
MseI	TTAA	3 cut(s)	123, 189, 542
MslI	CAYNNNNRTG	2 cut(s)	516, 738
MspI	CCGG	2 cut(s)	26, 565
MspR9I	CCNGG	2 cut(s)	27, 455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	8 cut(s)	212, 273, 276, 387, 488, 491, 500, 644
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	10, 104, 496, 775
NlaIII	CATG	9 cut(s)	245, 274, 491, 521, 613, 623, 737, 784, 838
NlaIV	GGNNCC	2 cut(s)	646, 777
NspI	RCATGY	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	9 cut(s)	208, 211, 214, 269, 278, 452, 484, 493, 802
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	646, 777
PspPI	GGNCC	2 cut(s)	574, 677
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	775
RseI	CAYNNNNRTG	2 cut(s)	516, 738
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	123, 189, 542
SatI	GCNGC	9 cut(s)	207, 210, 213, 268, 277, 451, 483, 492, 801
Sau3AI	GATC	4 cut(s)	10, 104, 496, 775
Sau96I	GGNCC	2 cut(s)	574, 677
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	27, 455
SduI	GDGCHC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	516, 738
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	3 cut(s)	744, 842, 854
SsiI	CCGC	3 cut(s)	99, 390, 450
SspMI	CTAG	2 cut(s)	372, 500
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	25, 453
StyI	CCWWGG	2 cut(s)	93, 371
TaaI	ACNGT	1 cut(s)	819
TaiI	ACGT	2 cut(s)	177, 654
TaqI	TCGA	2 cut(s)	107, 750
TasI	AATT	3 cut(s)	744, 842, 854
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	123, 189, 542
Tru9I	TTAA	3 cut(s)	123, 189, 542
TscAI	CASTG	1 cut(s)	828
TseI	GCWGC	8 cut(s)	206, 209, 212, 267, 276, 482, 491, 800
TspDTI	ATGAA	6 cut(s)	108, 241, 247, 296, 639, 710
TspRI	CASTG	1 cut(s)	828
VpaK11BI	GGWCC	1 cut(s)	574
VspI	ATTAAT	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	371
XspI	CTAG	2 cut(s)	372, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.