Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0019424

Physical Location & Seq

Genomic Coordinates Forward (+)

73678731 .. 73679468

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGACTGCGATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAAAGTGGCCCATTTTTGCTCAATGTGTGGGCCAAAATTCTGTTCTATGAAGATAACAGAGGATGTTAGGAAGTATGCTGAGGAGCATGGTTATGGAACTGCCGAGGAAGCTGTGAAGCGTGGTATGGATCCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAACGGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAACCTCAGAGAGTTGAAGGATCAAGTGAATGGTTATAACCTGTTCGACAACCCTGGAGGCTTTCGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

111

Amino Acids

12.25

Weight (kDa)

5.15

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068691
rosa_laevigata	RLG00000035992 RLG00000035995 RLG00000035998
rosa_samantha	Rh5AG450000 Rh5DG481600
rosa_wichuraiana	Rw0G009860 Rw5G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	44
AclWI	GGATC	3 cut(s)	170, 183, 291
AcsI	RAATTY	2 cut(s)	83, 249
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	3 cut(s)	170, 183, 291
AoxI	GGCC	2 cut(s)	54, 77
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	83, 249
AspS9I	GGNCC	2 cut(s)	55, 77
AsuHPI	GGTGA	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	55, 77
BmiI	GGNNCC	2 cut(s)	46, 177
BmrFI	CCNGG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	150, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	150, 316
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	117, 180, 283
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	56, 79
BshNI	GGYRCC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	2 cut(s)	56, 79
Bsp143I	GATC	2 cut(s)	175, 283
BspANI	GGCC	2 cut(s)	56, 79
BspCNI	CTCAG	3 cut(s)	118, 181, 282
BspLI	GGNNCC	2 cut(s)	46, 177
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	3 cut(s)	170, 183, 291
BspT107I	GGYRCC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	150, 316
BssMI	GATC	2 cut(s)	175, 283
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	126, 189, 269
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	178, 286
BstMBI	GATC	2 cut(s)	175, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 155
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	56, 79
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	55, 77
CviAII	CATG	4 cut(s)	20, 134, 181, 230
CviJI	RGCY	4 cut(s)	56, 79, 158, 324
CviKI_1	RGCY	4 cut(s)	56, 79, 158, 324
DdeI	CTNAG	3 cut(s)	126, 189, 269
DpnI	GATC	2 cut(s)	177, 285
DpnII	GATC	2 cut(s)	175, 283
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	23, 137, 184, 233
FaiI	YATR	9 cut(s)	21, 95, 123, 135, 141, 173, 182, 231, 300
FatI	CATG	4 cut(s)	19, 133, 180, 229
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	56, 79
Hin1II	CATG	4 cut(s)	23, 137, 184, 233
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	25, 35, 274
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 155
HpyF3I	CTNAG	3 cut(s)	126, 189, 269
Hsp92II	CATG	4 cut(s)	23, 137, 184, 233
Kzo9I	GATC	2 cut(s)	175, 283
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	44, 48, 273, 303, 317, 330
Lsp1109I	GCAGC	1 cut(s)	187
MalI	GATC	2 cut(s)	177, 285
MboI	GATC	2 cut(s)	175, 283
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	83, 237, 249
MnlI	CCTC	5 cut(s)	100, 121, 145, 278, 314
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 155
NdeII	GATC	2 cut(s)	175, 283
NlaIII	CATG	4 cut(s)	23, 137, 184, 233
NlaIV	GGNNCC	2 cut(s)	46, 177
NmeAIII	GCCGAG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	46, 177
PspPI	GGNCC	2 cut(s)	55, 77
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	175, 283
Sau96I	GGNCC	2 cut(s)	55, 77
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	4 cut(s)	46, 160, 270, 306
SfcI	CTRYAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	83, 237, 249
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	309
TasI	AATT	3 cut(s)	83, 237, 249
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	39, 110
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	83, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.