RLG00000036237

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020710
Physical Location & Seq
Reverse (-)
77888425 .. 77889768
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036237

Sequence Viewer

Length: 648 bp
ATGGATCAAAGCCTAAAATTAGCTAGTGTATCTTGCAACCAGGACAGAAGTAAGTTTGAGGAGTTGCCGGATTGCATTCTGGAATCCATAGTTTCGTTGCTCCCGCTAAGAGATGCAATGGAGAGTAGCATGATTTTCCAAGGGTTGAAGCACGTTTGGTTGAATTCAATACAAACAAGGCGCAATCTTGTATTTGATGTTCCAAACATTTACGGAAGTTGGAGACGACCAAGAAAAGATGATGAAGACTTTATGTGTGCCGAAAGACCCCAAACCGGCAGCTTACCAACATTTGGAAATCTCAAGCAATTGAACTTGCAAATCGAAAGAGGTTATTACAATAGCATCCCTATTCATCTGAGATGTGTTGTGGACCTCCTCAAGGTTGCACCCCTTTTGGAAGAGCTCACAATAACGATAGAGGGACAAAGGGAGTTTGATGAGACTGATCAACAAGGGATAAGGAACCTTGATTGTGGATTCACACACAACCGATTAAAGAAAGTTAAGATGCATGGGATCCAAGGTAATTGGTATGAGATAGAGTTTGCTATTTGGATTCTAAAGAATACTACAAACCTTGAGATAATGATTATTGATCCCAATTGGAAACGCTACCTTGGTGATAGTGTGAGAATACAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

216

Amino Acids

25.04

Weight (kDa)

5.86

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 97 - 202 4.3e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020710)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036237
rosa_multiflora Rmu_sc0005745.1_g000033 Rmu_sc0005745.1_g000034
rosa_samantha Rh5AG469900 Rh5BG489200 Rh5DG499800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 1 cut(s) 104
AclWI GGATC 4 cut(s) 12, 514, 527, 593
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 3 cut(s) 275, 293, 382
AgsI TTSAA 4 cut(s) 148, 163, 168, 313
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 3 cut(s) 23, 282, 406
AluI AGCT 3 cut(s) 23, 282, 406
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 217, 437
AlwI GGATC 4 cut(s) 12, 514, 527, 593
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 1 cut(s) 373
BamHI GGATCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 217, 437
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 467, 521
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 103, 354, 501
BpiI GAAGAC 1 cut(s) 252
BpuEI CTTGAG 3 cut(s) 287, 365, 602
BsaJI CCNNGG 3 cut(s) 139, 523, 619
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 293, 382
Bse118I RCCGGY 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 139, 523, 619
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 275, 293, 382
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 74, 368
BseXI GCAGC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 2 cut(s) 68, 276
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 275, 293, 382
BsmAI GTCTC 2 cut(s) 217, 437
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 4 cut(s) 4, 448, 519, 598
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 467, 521
BspPI GGATC 4 cut(s) 12, 514, 527, 593
BspQI GCTCTTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 139, 523, 619
BssMI GATC 4 cut(s) 4, 448, 519, 598
BssT1I CCWWGG 3 cut(s) 139, 523, 619
Bst2UI CCWGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 107, 359
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 4 cut(s) 7, 451, 522, 601
BstMAI GTCTC 2 cut(s) 217, 437
BstMBI GATC 4 cut(s) 4, 448, 519, 598
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BtsCI GGATG 1 cut(s) 345
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 373
CviAII CATG 2 cut(s) 130, 515
CviJI RGCY 4 cut(s) 12, 23, 282, 406
CviKI_1 RGCY 4 cut(s) 12, 23, 282, 406
DdeI CTNAG 2 cut(s) 107, 359
DpnI GATC 4 cut(s) 6, 450, 521, 600
DpnII GATC 4 cut(s) 4, 448, 519, 598
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 3 cut(s) 139, 523, 619
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 3 cut(s) 139, 523, 619
EcoT22I ATGCAT 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 3 cut(s) 139, 523, 619
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 2 cut(s) 133, 518
FaiI YATR 5 cut(s) 89, 131, 254, 516, 537
FaqI GGGAC 1 cut(s) 438
FatI CATG 2 cut(s) 129, 514
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 280
HapII CCGG 2 cut(s) 68, 276
HhaI GCGC 1 cut(s) 183
Hin1II CATG 2 cut(s) 133, 518
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 3 cut(s) 83, 480, 559
HpaII CCGG 2 cut(s) 68, 276
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 36, 75, 116, 319, 389, 514
HpyF3I CTNAG 2 cut(s) 107, 359
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 133, 518
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 4 cut(s) 4, 448, 519, 598
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 5 cut(s) 26, 53, 65, 81, 289
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 3 cut(s) 103, 354, 501
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 153
MalI GATC 4 cut(s) 6, 450, 521, 600
MboI GATC 4 cut(s) 4, 448, 519, 598
MboII GAAGA 2 cut(s) 257, 413
MfeI CAATTG 2 cut(s) 308, 604
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 5 cut(s) 17, 163, 308, 529, 604
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 52, 323, 386, 389, 415
Mph1103I ATGCAT 1 cut(s) 516
MseI TTAA 2 cut(s) 497, 507
MspI CCGG 2 cut(s) 68, 276
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 2 cut(s) 308, 604
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 41
NdeII GATC 4 cut(s) 4, 448, 519, 598
NlaIII CATG 2 cut(s) 133, 518
NlaIV GGNNCC 2 cut(s) 467, 521
NsiI ATGCAT 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 83, 480, 559
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 467, 521
PspPI GGNCC 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PsuI RGATCY 1 cut(s) 519
SacI GAGCTC 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 497, 507
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 4 cut(s) 4, 448, 519, 598
Sau96I GGNCC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 103, 354, 501
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 302, 380, 581
SmoI CTYRAG 3 cut(s) 302, 380, 581
Sse9I AATT 5 cut(s) 17, 163, 308, 529, 604
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 3 cut(s) 139, 523, 619
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 324
TasI AATT 5 cut(s) 17, 163, 308, 529, 604
TfiI GAWTC 3 cut(s) 83, 480, 559
Tru1I TTAA 2 cut(s) 497, 507
Tru9I TTAA 2 cut(s) 497, 507
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 258, 344
TspGWI ACGGA 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 380
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.