Rmu_sc0005745.1_g000034

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005745.1
OG0020710
Physical Location & Seq
Reverse (-)
131858 .. 132454
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005745.1_g000034.1.cds

Sequence Viewer

Length: 597 bp
atggagagtagcatgattttccgagggttgaagcacgtttggttgaattcaatacaaacaaggcgcaatcttgtatttgatgttccaaacatttacggaagttggagacgaccaagaaaagatgatgaagactttgtaagacgtgtggatcaatttttggagcgttaccaaggtgacaaagtagactctttcatattagactataactttaataaggaaccatggctgcatgaagttgtcggtaaatggattggttttgcaattagaaagggtgttcaagagcttcgtctccctatgccgacgaattttggtcctttgtataatgatgatttccctcaccagttactgtcagaacaacaagtgaaggctgttgctcctctaaagctaaaatctttgtccttgaaaggatttcgtctaagagttcctcctgaatttgacggattcaatcagctcactactctttgtctgcattcggttaaggttgatggaatttttatgtcacatctcttctctctttgttctttccttgaccttaaagaattgcacatgggagtacttctattcacatctgaatattgtttctggtcgtctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

198

Amino Acids

23.32

Weight (kDa)

7.75

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020710)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036237
rosa_multiflora Rmu_sc0005745.1_g000033 Rmu_sc0005745.1_g000034
rosa_samantha Rh5AG469900 Rh5BG489200 Rh5DG499800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 4 cut(s) 46, 304, 431, 489
AfaI GTAC 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 6 cut(s) 31, 46, 51, 278, 403, 445
AjiI CACGTC 1 cut(s) 143
AluBI AGCT 3 cut(s) 283, 385, 451
AluI AGCT 3 cut(s) 283, 385, 451
Alw26I GTCTC 2 cut(s) 100, 293
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 4 cut(s) 46, 304, 431, 489
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 185, 329
AvaII GGWCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 100, 293
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 22, 169, 221
Bse1I ACTGG 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 22, 169, 221
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 100, 293
BsmBI CGTCTC 2 cut(s) 100, 293
BsmI GAATGC 1 cut(s) 469
Bsp143I GATC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 22, 169, 221
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 169, 221
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 416
BstDSI CCRYGG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 100, 293
BstMBI GATC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 221
BtrI CACGTC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 554
CviAII CATG 4 cut(s) 13, 222, 230, 547
CviJI RGCY 5 cut(s) 226, 283, 368, 385, 451
CviKI_1 RGCY 5 cut(s) 226, 283, 368, 385, 451
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 1 cut(s) 416
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 2 cut(s) 169, 221
Eco47I GGWCC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 169, 221
ErhI CCWWGG 2 cut(s) 169, 221
Esp3I CGTCTC 2 cut(s) 100, 293
FaeI CATG 4 cut(s) 16, 225, 233, 550
FaiI YATR 9 cut(s) 14, 194, 204, 223, 231, 296, 321, 497, 548
FatI CATG 4 cut(s) 12, 221, 229, 546
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 66
Hin1II CATG 4 cut(s) 16, 225, 233, 550
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 185, 441
HphI GGTGA 2 cut(s) 185, 329
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 23, 352, 571, 592
Hpy188III TCNNGA 2 cut(s) 278, 428
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 2 cut(s) 36, 142
HpyCH4V TGCA 4 cut(s) 229, 260, 469, 544
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 2 cut(s) 36, 142
Hsp92II CATG 4 cut(s) 16, 225, 233, 550
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 160, 379
LpnPI CCDG 3 cut(s) 353, 441, 568
Lsp1109I GCAGC 1 cut(s) 213
MaeII ACGT 2 cut(s) 36, 142
MaeIII GTNAC 4 cut(s) 164, 173, 342, 498
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 140, 499
MluCI AATT 7 cut(s) 46, 152, 261, 304, 431, 489, 539
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 17, 345, 387, 435
MseI TTAA 3 cut(s) 210, 477, 534
Mva1269I GAATGC 1 cut(s) 469
NcoI CCATGG 1 cut(s) 221
NdeII GATC 1 cut(s) 148
NlaIII CATG 4 cut(s) 16, 225, 233, 550
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 173, 498
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
SaqAI TTAA 3 cut(s) 210, 477, 534
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 555
SchI GAGTC 1 cut(s) 179
SetI ASST 8 cut(s) 39, 145, 175, 285, 387, 453, 483, 534
SinI GGWCC 1 cut(s) 311
Sse9I AATT 7 cut(s) 46, 152, 261, 304, 431, 489, 539
SspI AATATT 1 cut(s) 575
StyI CCWWGG 2 cut(s) 169, 221
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 2 cut(s) 39, 145
TasI AATT 7 cut(s) 46, 152, 261, 304, 431, 489, 539
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 3 cut(s) 210, 477, 534
Tru9I TTAA 3 cut(s) 210, 477, 534
TseFI GTSAC 2 cut(s) 173, 498
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 2 cut(s) 173, 498
TspDTI ATGAA 3 cut(s) 141, 181, 246
TspGWI ACGGA 2 cut(s) 111, 453
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 4 cut(s) 46, 304, 431, 489
XmiI GTMKAC 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.