Rmu_sc0005745.1_g000033

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005745.1
OG0020710
Physical Location & Seq
Reverse (-)
131276 .. 131692
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005745.1_g000033.1.cds

Sequence Viewer

Length: 417 bp
atgttgcctctaacactaagacaattaattccatcgtgccctgcacttgagacgcttgatctacagatgtgtgccgaaagaccccaaatcggcagcttaccaacatttggaaatctcaagcaattgaacttgcaaatcgaaagaggttattacaatagcatccctattcatctgagatgtgttgtggacctcctcagggttgcatcccttttggaagagctcacaataacgatagagggacaaagggagtttgatgagactgatcaacaagagataaggaaccttgattgtggattcacacacaaccaattgaagaaagttaagatgcatgggatccaaggtaattggtatgagatagagtttgctatttggattctaaagaatactacaaaccttgagatatataatggttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

138

Amino Acids

16.01

Weight (kDa)

5.15

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020710)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036237
rosa_multiflora Rmu_sc0005745.1_g000033 Rmu_sc0005745.1_g000034
rosa_samantha Rh5AG469900 Rh5BG489200 Rh5DG499800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 2 cut(s) 328, 341
AfiI CCNNNNNNNGG 3 cut(s) 89, 107, 196
AgsI TTSAA 2 cut(s) 127, 313
AluBI AGCT 2 cut(s) 96, 220
AluI AGCT 2 cut(s) 96, 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 44, 251
AlwI GGATC 2 cut(s) 328, 341
ApeKI GCWGC 1 cut(s) 93
AseI ATTAAT 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 40
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 44, 251
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 281, 335
BmsI GCATC 3 cut(s) 168, 212, 315
BpuEI CTTGAG 3 cut(s) 68, 101, 416
BsaJI CCNNGG 1 cut(s) 337
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 107, 196
Bse21I CCTNAGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 159, 203
BseLI CCNNNNNNNGG 3 cut(s) 89, 107, 196
BseMII CTCAG 2 cut(s) 164, 208
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 89, 107, 196
BsmAI GTCTC 2 cut(s) 44, 251
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 41, 222
Bsp143I GATC 3 cut(s) 58, 262, 333
BspCNI CTCAG 2 cut(s) 165, 207
BspLI GGNNCC 2 cut(s) 281, 335
BspPI GGATC 2 cut(s) 328, 341
BspQI GCTCTTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 58, 262, 333
BssT1I CCWWGG 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 17, 173, 194
BstF5I GGATG 2 cut(s) 159, 203
BstKTI GATC 3 cut(s) 61, 265, 336
BstMAI GTCTC 2 cut(s) 44, 251
BstMBI GATC 3 cut(s) 58, 262, 333
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 159, 203
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 61
CviAII CATG 1 cut(s) 329
CviJI RGCY 2 cut(s) 96, 220
CviKI_1 RGCY 2 cut(s) 96, 220
DdeI CTNAG 3 cut(s) 17, 173, 194
DpnI GATC 3 cut(s) 60, 264, 335
DpnII GATC 3 cut(s) 58, 262, 333
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 330, 351, 403, 405
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 146, 190
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HgaI GACGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 332
HinfI GANTC 2 cut(s) 294, 373
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 44, 133, 203, 328
HpyF3I CTNAG 3 cut(s) 17, 173, 194
Hsp92II CATG 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 58, 262, 333
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 2 cut(s) 54, 181
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 3 cut(s) 168, 212, 315
MalI GATC 3 cut(s) 60, 264, 335
MboI GATC 3 cut(s) 58, 262, 333
MboII GAAGA 2 cut(s) 227, 325
MfeI CAATTG 2 cut(s) 122, 308
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 41, 222
MluCI AATT 5 cut(s) 23, 27, 122, 308, 343
MnlI CCTC 5 cut(s) 18, 137, 200, 203, 229
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 2 cut(s) 26, 321
MunI CAATTG 2 cut(s) 122, 308
NdeII GATC 3 cut(s) 58, 262, 333
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 2 cut(s) 281, 335
NsiI ATGCAT 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 294, 373
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 281, 335
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 333
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 26, 321
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 3 cut(s) 58, 262, 333
Sau96I GGNCC 1 cut(s) 187
SduI GDGCHC 2 cut(s) 41, 222
SetI ASST 7 cut(s) 98, 148, 192, 222, 285, 343, 396
SfaNI GCATC 3 cut(s) 168, 212, 315
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 3 cut(s) 47, 116, 395
SmoI CTYRAG 3 cut(s) 47, 116, 395
Sse9I AATT 5 cut(s) 23, 27, 122, 308, 343
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 337
TaqI TCGA 1 cut(s) 138
TasI AATT 5 cut(s) 23, 27, 122, 308, 343
TfiI GAWTC 2 cut(s) 294, 373
Tru1I TTAA 2 cut(s) 26, 321
Tru9I TTAA 2 cut(s) 26, 321
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.