Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0020672

Physical Location & Seq

Genomic Coordinates Reverse (-)

83676690 .. 83681134

Gene Structure 4445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCTTGGTCGATTTCAGTCTGTTCCCAGTTGGGGAATTTCCGTTTCACATTCAAAGTTTCAATCTTTAAAGGTTGTCGAGAATTGATTGCATTGGACTTCTTGGAGAATGGGTCCCTTGGAAATTGCAGGGCGGATACTCATGACATTCATACGACTTTGCATAGGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTTGGACAAATTCCTGCACGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTGTTGCATATCTTTCAGACAAAGAAATCTTTTATGTCGAAGATAAAGTAGGAGGAGTTCAATTATGGGATAGTTTCAGTCACCCTAGCAATACAATCTTACTTGAACAAATGCTAGGATTCGATAGTAAATCTGGAACAAAGAATGTCATGACTTCCTGGAAAAGTGAGAATGATCCATCAACTGGGAGATATTTGATAAAACACAGAGATTCAAAGTATTTCTCTGATTCTTTTTCTGAGTATGGATACAGGGATATACTGAAAGTTATGTCTGACCAAATGAAGAAAGCAAGGCATTTCCATTTCCTTGATGAAGGAGCTGGCAGGAGGCTTAAAAGGGTCAAAGATCGATTCAGAGAAATGACACTGGTATTAGCAGGCCAGATACCTTTTACACTTCTGATGCTACAAGTTTCCTTTGAAGTTTCAAGTGATCTCATAATTCAAGTGAGGGGAAGCAGATATTTGCTTCACAAGGTCAGACAGTTTCCGCTCCTGTCAAACTGTTTGAGGATGCGGAAGCTTGCTTTGAATATATATGCAGAAACCTATAATCCAACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

296

Amino Acids

33.66

Weight (kDa)

9.38

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	47 - 100	6.1e-11	RED-like protein N-terminal region
B_lectin	PF01453	99 - 161	1.8e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020672)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021754 RLG00000036711
rosa_multiflora	Rmu_sc0004168.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004360
rosa_rugosa	Rorug05G0456400
rosa_samantha	Rh5CG556500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	3 cut(s)	134, 812, 838
AclWI	GGATC	2 cut(s)	277, 488
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	37, 237
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	33, 503
AgsI	TTSAA	9 cut(s)	55, 63, 380, 425, 534, 743, 750, 767, 853
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	190, 641, 844
AluI	AGCT	3 cut(s)	190, 641, 844
AlwI	GGATC	2 cut(s)	277, 488
AoxI	GGCC	2 cut(s)	201, 700
ApoI	RAATTY	2 cut(s)	37, 237
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	203
BccI	CCATC	2 cut(s)	212, 505
BciT130I	CCWGG	1 cut(s)	478
BciVI	GTATCC	2 cut(s)	130, 560
BfaI	CTAG	2 cut(s)	405, 434
BfuI	GTATCC	2 cut(s)	130, 560
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	115, 116
BmrFI	CCNGG	1 cut(s)	478
BmrI	ACTGGG	2 cut(s)	22, 513
BmsI	GCATC	3 cut(s)	301, 714, 825
BmuI	ACTGGG	2 cut(s)	22, 513
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	670
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 503
Bse1I	ACTGG	3 cut(s)	28, 508, 693
BseBI	CCWGG	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	840
BseLI	CCNNNNNNNGG	2 cut(s)	33, 503
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	3 cut(s)	28, 508, 693
BseRI	GAGGAG	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	203, 702
BshVI	ATCGAT	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	33, 503
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	203, 702
Bsp143I	GATC	4 cut(s)	269, 493, 667, 754
BspACI	CCGC	3 cut(s)	134, 812, 838
BspANI	GGCC	2 cut(s)	203, 702
BspCNI	CTCAG	1 cut(s)	550
BspDI	ATCGAT	1 cut(s)	670
BspHI	TCATGA	2 cut(s)	142, 468
BspLI	GGNNCC	2 cut(s)	115, 116
BspPI	GGATC	2 cut(s)	277, 488
BsrBI	CCGCTC	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	28, 508, 693
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	269, 493, 667, 754
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	5 cut(s)	182, 208, 807, 827, 883
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	643, 700, 846
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	840
BstKTI	GATC	4 cut(s)	272, 496, 670, 757
BstMBI	GATC	4 cut(s)	269, 493, 667, 754
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	670
BsuI	GTATCC	2 cut(s)	130, 560
BsuRI	GGCC	2 cut(s)	203, 702
BsuTUI	ATCGAT	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	204, 686
Cac8I	GCNNGC	3 cut(s)	643, 700, 846
CciI	TCATGA	2 cut(s)	142, 468
Cfr13I	GGNCC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	143, 469
CviJI	RGCY	7 cut(s)	190, 203, 284, 641, 652, 702, 844
CviKI_1	RGCY	7 cut(s)	190, 203, 284, 641, 652, 702, 844
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	271, 495, 669, 756
DpnII	GATC	4 cut(s)	269, 493, 667, 754
DraI	TTTAAA	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	146, 472
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	142, 468
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	1 cut(s)	847
FspBI	CTAG	2 cut(s)	405, 434
HaeIII	GGCC	2 cut(s)	203, 702
Hin1II	CATG	2 cut(s)	146, 472
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	4 cut(s)	438, 530, 548, 672
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	178, 185
Hpy188I	TCNGA	7 cut(s)	337, 547, 559, 595, 677, 723, 803
Hpy188III	TCNNGA	4 cut(s)	80, 143, 453, 469
Hpy8I	GTNNAC	2 cut(s)	178, 185
HpyAV	CCTTC	2 cut(s)	295, 629
HpyCH4III	ACNGT	5 cut(s)	182, 208, 807, 827, 883
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	7 cut(s)	92, 129, 163, 245, 314, 326, 863
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	146, 472
KflI	GGGWCCC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	269, 493, 667, 754
LmnI	GCTCC	2 cut(s)	638, 819
LweI	GCATC	3 cut(s)	301, 714, 825
MaeI	CTAG	2 cut(s)	405, 434
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	4 cut(s)	271, 495, 669, 756
MbiI	CCGCTC	1 cut(s)	814
MboI	GATC	4 cut(s)	269, 493, 667, 754
MboII	GAAGA	4 cut(s)	264, 304, 371, 616
MflI	RGATCY	1 cut(s)	269
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	6 cut(s)	37, 83, 124, 237, 380, 762
MluNI	TGGCCA	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	5 cut(s)	187, 365, 642, 765, 825
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	69, 654
Msp20I	TGGCCA	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
NdeII	GATC	4 cut(s)	269, 493, 667, 754
NlaIII	CATG	2 cut(s)	146, 472
NlaIV	GGNNCC	2 cut(s)	115, 116
NmuCI	GTSAC	1 cut(s)	398
PagI	TCATGA	2 cut(s)	142, 468
PfeI	GAWTC	4 cut(s)	438, 530, 548, 672
PflMI	CCANNNNNTGG	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	115, 116
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	69, 654
Sau3AI	GATC	4 cut(s)	269, 493, 667, 754
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	478
SetI	ASST	8 cut(s)	76, 192, 250, 643, 712, 801, 846, 872
SfaNI	GCATC	3 cut(s)	301, 714, 825
SinI	GGWCC	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	37, 83, 124, 237, 380, 762
SsiI	CCGC	3 cut(s)	134, 812, 838
SspMI	CTAG	2 cut(s)	405, 434
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	5 cut(s)	182, 208, 807, 827, 883
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	6 cut(s)	11, 79, 177, 357, 441, 670
TasI	AATT	6 cut(s)	37, 83, 124, 237, 380, 762
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	4 cut(s)	438, 530, 548, 672
Tru1I	TTAA	2 cut(s)	69, 654
Tru9I	TTAA	2 cut(s)	69, 654
TscAI	CASTG	2 cut(s)	211, 693
TseFI	GTSAC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	140, 617, 648
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	211, 693
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	2 cut(s)	37, 237
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	405, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.