Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004168.1

Orthogroup ID

OG0020672

Physical Location & Seq

Genomic Coordinates Reverse (-)

2452 .. 5709

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004168.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ctggcagtaattctgaatcaagagagggcaagaagcccttggaaattgcagggtggatacactcatgacattcatatgactttgcataggagtaaagtcgactgtccacagcttgaggaaatggccactgtcagttttgatggtgctgtactcagacaaattcctgcaagtatgtcatatctttgtgttggatcttctggcaaggctgacaagaagaaaaagaaggggaaagatgcaaaagttgttgcatatctttcagacaaagaaatcttttatgttgaagataaagtaggaggagttcaattatgggatagtttcagtcaccctagcaatacaatcttacttgaacaaatgctaggattcgatagtaaatctggaacaaagaatgtcatgacttcctggaaaagtgagaatgatccatcaactgggatatatttggttggattgacgcctgaggcaccaacaaaagtgagcatcaaaacttatgatgtcagatggtggaaagaactggatggatacagggatatactgaagttcgttggcaagataccttttacactactgatgctacaagtttcctttgaagtttcaagtgatctcataattcaagtgaagggaagcagatatttgcttcacaaggtcacacagtttctgctcctgtcaaactgtttgaggatgcggaagctgtgctttgaatatatatgcagaaacctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

238

Amino Acids

27.05

Weight (kDa)

9.16

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020672)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021754 RLG00000036711
rosa_multiflora	Rmu_sc0004168.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004360
rosa_rugosa	Rorug05G0456400
rosa_samantha	Rh5CG556500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	679
AclWI	GGATC	2 cut(s)	199, 410
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	7 cut(s)	281, 302, 347, 584, 591, 608, 695
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	112, 685
AluI	AGCT	2 cut(s)	112, 685
AlwI	GGATC	2 cut(s)	199, 410
AlwNI	CAGNNNCTG	1 cut(s)	652
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	457
BccI	CCATC	4 cut(s)	134, 427, 489, 506
BciT130I	CCWGG	1 cut(s)	400
BciVI	GTATCC	2 cut(s)	50, 509
BfaI	CTAG	2 cut(s)	327, 356
BfuI	GTATCC	2 cut(s)	50, 509
Bme1390I	CCNGG	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	4 cut(s)	223, 483, 555, 666
BmuI	ACTGGG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	430, 513
Bse21I	CCTNAGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	517, 681
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	166, 444
BseNI	ACTGG	2 cut(s)	430, 513
BseRI	GAGGAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	425
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	191, 415, 595
BspACI	CCGC	1 cut(s)	679
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	165, 445
BspHI	TCATGA	2 cut(s)	64, 390
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	199, 410
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	430, 513
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	3 cut(s)	191, 415, 595
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	4 cut(s)	104, 130, 648, 668
BstACI	GRCGYC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	152, 453
BstF5I	GGATG	2 cut(s)	517, 681
BstKTI	GATC	3 cut(s)	194, 418, 598
BstMBI	GATC	3 cut(s)	191, 415, 595
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	2 cut(s)	50, 509
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	517, 681
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	652
CciI	TCATGA	2 cut(s)	64, 390
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	65, 391
CviJI	RGCY	5 cut(s)	36, 112, 125, 206, 685
CviKI_1	RGCY	5 cut(s)	36, 112, 125, 206, 685
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	152, 453
DpnI	GATC	3 cut(s)	193, 417, 597
DpnII	GATC	3 cut(s)	191, 415, 595
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	551
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	68, 394
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 674, 706
FatI	CATG	2 cut(s)	64, 390
FauNDI	CATATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	2 cut(s)	524, 688
FspBI	CTAG	2 cut(s)	327, 356
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	68, 394
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	16, 360
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	100, 107
Hpy188I	TCNGA	4 cut(s)	15, 155, 259, 494
Hpy188III	TCNNGA	4 cut(s)	20, 65, 375, 391
Hpy8I	GTNNAC	2 cut(s)	100, 107
HpyAV	CCTTC	2 cut(s)	217, 607
HpyCH4III	ACNGT	4 cut(s)	104, 130, 648, 668
HpyCH4V	TGCA	6 cut(s)	49, 85, 167, 236, 248, 705
HpyF3I	CTNAG	2 cut(s)	152, 453
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	68, 394
Kzo9I	GATC	3 cut(s)	191, 415, 595
LmnI	GCTCC	1 cut(s)	660
LweI	GCATC	4 cut(s)	223, 483, 555, 666
MaeI	CTAG	2 cut(s)	327, 356
MaeIII	GTNAC	2 cut(s)	320, 640
MalI	GATC	3 cut(s)	193, 417, 597
MboI	GATC	3 cut(s)	191, 415, 595
MboII	GAAGA	3 cut(s)	186, 226, 293
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	5 cut(s)	9, 44, 159, 302, 603
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	169, 421
MnlI	CCTC	5 cut(s)	18, 109, 287, 448, 666
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	3 cut(s)	191, 415, 595
NlaIII	CATG	2 cut(s)	68, 394
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	2 cut(s)	320, 640
PagI	TCATGA	2 cut(s)	64, 390
PfeI	GAWTC	2 cut(s)	16, 360
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	459
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
PstNI	CAGNNNCTG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	98
Sau3AI	GATC	3 cut(s)	191, 415, 595
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	5 cut(s)	114, 553, 642, 687, 714
SfaNI	GCATC	4 cut(s)	223, 483, 555, 666
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	9, 44, 159, 302, 603
SsiI	CCGC	1 cut(s)	679
SspMI	CTAG	2 cut(s)	327, 356
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	4 cut(s)	104, 130, 648, 668
TaqI	TCGA	2 cut(s)	99, 363
TasI	AATT	5 cut(s)	9, 44, 159, 302, 603
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	16, 360
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	320, 640
Tsp45I	GTSAC	2 cut(s)	320, 640
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	327, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.