Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020672

Physical Location & Seq

Genomic Coordinates Forward (+)

6065495 .. 6073017

Gene Structure 7523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGACTTTGCATAGGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTTGGACAAATTCCTGCAAGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTGTTGCATATCTTTCAGACAAAGAAATCTTTTATGTCGAAGATAAAGTAGGAGGAGTTCAATTATGGGATAGTTTCAGTCACCCTAGCAATACAATCTTACTTGAACAAATGCTAGGATTCGATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

98

Amino Acids

10.73

Weight (kDa)

6.06

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	2 - 49	8e-09	RED-like protein N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020672)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021754 RLG00000036711
rosa_multiflora	Rmu_sc0004168.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004360
rosa_rugosa	Rorug05G0456400
rosa_samantha	Rh5CG556500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	227, 272
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	50
BccI	CCATC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	252, 281
BmsI	GCATC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	124
BssMI	GATC	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	29, 55
BstKTI	GATC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	74
CviJI	RGCY	3 cut(s)	37, 50, 131
CviKI_1	RGCY	3 cut(s)	37, 50, 131
CviQI	GTAC	1 cut(s)	74
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	48
FaiI	YATR	6 cut(s)	12, 98, 103, 175, 201, 232
FblI	GTMKAC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	252, 281
HaeIII	GGCC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	25, 32
Hpy188I	TCNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	25, 32
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	29, 55
HpyCH4V	TGCA	4 cut(s)	10, 92, 161, 173
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	2 cut(s)	102, 108
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	252, 281
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	3 cut(s)	111, 151, 218
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	84, 227
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	34, 212
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	295
Msp20I	TGGCCA	1 cut(s)	50
NdeII	GATC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	285
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	116
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	84, 227
SspMI	CTAG	2 cut(s)	252, 281
TaaI	ACNGT	2 cut(s)	29, 55
TaqI	TCGA	3 cut(s)	24, 204, 288
TasI	AATT	2 cut(s)	84, 227
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	2 cut(s)	252, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.