Rorug05G0456400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
63002682 .. 63004361
1680 bp
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UTR
Exon/CDS
Intron
Rorug05G0456400.1

Sequence Viewer

Length: 480 bp
ATGGAGAGATCTGGTAGAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGGTCCGATTTCGTTCTTGAGCTTTACGAGAGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGATCGCCACCACCAAGACCAGGAAGCAAAACAAGCGAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCATCTCACGGCTAAGGCTGTCACCAACCAGTTTTCTAATGTAAATGTGGTGTGGTACTCTGGTTGCCTTGAGTGTGTTGACCATTTGGTAGTTCCGACTGTTTTGCACCTTACTAGTAGTGATGAGCAGCTAACATATAAGAAGATCTCACTTTGTGATTTCAAGCTGTTGAGTAGCTTGAAAGTTTTGTGGGTCGTAGAGTTACAGAGAGAAGTAGAGAAGCAAAGGAGCGCTAGATCAACAAGAAAATCATAA

Protein Analysis

159

Amino Acids

18.2

Weight (kDa)

10.32

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020672)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021754 RLG00000036711
rosa_multiflora Rmu_sc0004168.1_g000002
rosa_roxburghii Rroxscaffold_1G00004360
rosa_rugosa Rorug05G0456400
rosa_samantha Rh5CG556500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 145
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 380
AfaI GTAC 1 cut(s) 281
AfeI AGCGCT 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 33, 145, 168
AgsI TTSAA 2 cut(s) 388, 406
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 81, 355, 391, 402
AluI AGCT 4 cut(s) 81, 355, 391, 402
AlwI GGATC 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 125, 352
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 160, 238
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 112, 364
BceAI ACGGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 2 cut(s) 339, 459
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 459
BglII AGATCT 2 cut(s) 8, 369
BisI GCNGC 2 cut(s) 126, 353
BlsI GCNGC 2 cut(s) 127, 354
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 97, 314
BsaBI GATNNNNATC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 145, 168
Bse1I ACTGG 3 cut(s) 139, 189, 253
Bse21I CCTNAGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 33, 145, 168
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 3 cut(s) 139, 189, 253
BseXI GCAGC 2 cut(s) 112, 364
BshNI GGYRCC 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 33, 145, 168
Bsp143I GATC 5 cut(s) 8, 50, 150, 369, 461
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 23
BsrI ACTGG 3 cut(s) 139, 189, 253
BssMI GATC 5 cut(s) 8, 50, 150, 369, 461
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 111, 325
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 55, 237
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 11, 53, 153, 372, 464
BstMBI GATC 5 cut(s) 8, 50, 150, 369, 461
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 112, 364
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 3 cut(s) 8, 50, 369
BstYI RGATCY 3 cut(s) 8, 50, 369
Bsu36I CCTNAGG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 7 cut(s) 81, 125, 236, 242, 355, 391, 402
CviKI_1 RGCY 7 cut(s) 81, 125, 236, 242, 355, 391, 402
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 55, 237
DpnI GATC 5 cut(s) 10, 52, 152, 371, 463
DpnII GATC 5 cut(s) 8, 50, 150, 369, 461
DraIII CACNNNGTG 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 62
Eco47III AGCGCT 1 cut(s) 457
Eco81I CCTNAGG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 167
FaiI YATR 4 cut(s) 207, 361, 363, 478
Fnu4HI GCNGC 2 cut(s) 126, 353
Fsp4HI GCNGC 2 cut(s) 126, 353
FspBI CTAG 2 cut(s) 339, 459
GlaI GCGC 1 cut(s) 457
GluI GCNGC 2 cut(s) 126, 353
HaeII RGCGCY 1 cut(s) 459
HhaI GCGC 1 cut(s) 458
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HphI GGTGA 2 cut(s) 160, 238
Hpy166II GTNNAC 2 cut(s) 199, 304
Hpy188I TCNGA 3 cut(s) 48, 66, 321
Hpy188III TCNNGA 3 cut(s) 35, 57, 76
Hpy8I GTNNAC 2 cut(s) 199, 304
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 111, 325
HpyCH4V TGCA 2 cut(s) 128, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 55, 237
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 5 cut(s) 8, 50, 150, 369, 461
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 9 cut(s) 42, 107, 114, 152, 154, 181, 202, 266, 270
Lsp1109I GCAGC 2 cut(s) 112, 364
MaeI CTAG 2 cut(s) 339, 459
MaeIII GTNAC 2 cut(s) 244, 426
MalI GATC 5 cut(s) 10, 52, 152, 371, 463
MboI GATC 5 cut(s) 8, 50, 150, 369, 461
MboII GAAGA 2 cut(s) 117, 379
MflI RGATCY 3 cut(s) 8, 50, 369
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 4 cut(s) 11, 53, 64, 207
MroXI GAANNNNTTC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 5 cut(s) 8, 50, 150, 369, 461
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 42
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 2 cut(s) 127, 354
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 3 cut(s) 8, 50, 369
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 204
SatI GCNGC 2 cut(s) 126, 353
Sau3AI GATC 5 cut(s) 8, 50, 150, 369, 461
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 169
SetI ASST 6 cut(s) 64, 83, 336, 357, 393, 404
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 76, 293
SmoI CTYRAG 2 cut(s) 76, 293
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 1 cut(s) 38
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 339, 459
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 111, 325
TasI AATT 1 cut(s) 38
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 125, 352
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 339, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.