Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020672

Physical Location & Seq

Genomic Coordinates Reverse (-)

77606039 .. 77607426

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG556500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACTTTGCATAGGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTCAGACAAATTCCTGCAAGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTGTTGCATATCTTTCAGACAAAGAAATCTTTTATGTTGAAGATAAAGTAGGAGGAGTTCAATTATGGGATAGTTTCAGTCACCCTAGCAATACAATCTTACTTGAACAAATGCTAGGATTCGATAGTAAATCTGGAACAAAGAATGTCATGACTTCCTGGAAAAGTGAGAATGATCCATCAACTGGGAGATATTTGGTTGGATTGACACCTGAGGCACCAACAAAAGTGTTCTTTTGGATCAATGGATCAATTCCCCACTGGAGGAGTGGGCATTGGGATAAATCAAAGTTCATTGGAATATCAGATATGGATGATCGATATGGAAGTGGATTTAGTCTGAAAGAAGATAAAACACACAGATTCAAAGTATTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

181

Amino Acids

20.35

Weight (kDa)

8.95

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	2 - 49	1.5e-08	RED-like protein N-terminal region
B_lectin	PF01453	48 - 110	6.2e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020672)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021754 RLG00000036711
rosa_multiflora	Rmu_sc0004168.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004360
rosa_rugosa	Rorug05G0456400
rosa_samantha	Rh5CG556500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	4 cut(s)	124, 335, 413, 421
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	350, 429
AgsI	TTSAA	4 cut(s)	206, 227, 272, 532
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	4 cut(s)	124, 335, 413, 421
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	382
BccI	CCATC	2 cut(s)	59, 352
BciT130I	CCWGG	1 cut(s)	325
BfaI	CTAG	2 cut(s)	252, 281
Bme1390I	CCNGG	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 429
Bse1I	ACTGG	2 cut(s)	355, 431
Bse21I	CCTNAGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	484
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	350, 429
BseMII	CTCAG	2 cut(s)	91, 369
BseNI	ACTGG	2 cut(s)	355, 431
BseRI	GAGGAG	2 cut(s)	234, 445
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	350, 429
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	5 cut(s)	116, 340, 405, 413, 481
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	90, 370
BspDI	ATCGAT	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	4 cut(s)	124, 335, 413, 421
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	355, 431
BssMI	GATC	5 cut(s)	116, 340, 405, 413, 481
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	29, 55
BstDEI	CTNAG	2 cut(s)	77, 378
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	5 cut(s)	119, 343, 408, 416, 484
BstMBI	GATC	5 cut(s)	116, 340, 405, 413, 481
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	484
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	51, 424
CciI	TCATGA	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	3 cut(s)	37, 50, 131
CviKI_1	RGCY	3 cut(s)	37, 50, 131
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	77, 378
DpnI	GATC	5 cut(s)	118, 342, 407, 415, 483
DpnII	GATC	5 cut(s)	116, 340, 405, 413, 481
EaeI	YGGCCR	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	319
FaiI	YATR	9 cut(s)	12, 98, 103, 175, 201, 232, 317, 476, 489
FatI	CATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	1 cut(s)	491
FspBI	CTAG	2 cut(s)	252, 281
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	285, 528
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	25, 32
Hpy188I	TCNGA	5 cut(s)	80, 184, 472, 507, 545
Hpy188III	TCNNGA	2 cut(s)	300, 316
Hpy8I	GTNNAC	2 cut(s)	25, 32
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	29, 55
HpyCH4V	TGCA	4 cut(s)	10, 92, 161, 173
HpyF3I	CTNAG	2 cut(s)	77, 378
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	116, 340, 405, 413, 481
LpnPI	CCDG	8 cut(s)	102, 108, 285, 310, 336, 337, 390, 412
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	252, 281
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	118, 342, 407, 415, 483
MboI	GATC	5 cut(s)	116, 340, 405, 413, 481
MboII	GAAGA	4 cut(s)	111, 151, 218, 524
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	84, 227, 417
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	94, 346
MnlI	CCTC	4 cut(s)	34, 212, 373, 423
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
NdeII	GATC	5 cut(s)	116, 340, 405, 413, 481
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	285, 528
PflMI	CCANNNNNTGG	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	384
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	23
Sau3AI	GATC	5 cut(s)	116, 340, 405, 413, 481
ScrFI	CCNGG	1 cut(s)	325
SetI	ASST	2 cut(s)	39, 379
SfaNI	GCATC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	84, 227, 417
SspMI	CTAG	2 cut(s)	252, 281
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	29, 55
TaqI	TCGA	3 cut(s)	24, 288, 484
TasI	AATT	3 cut(s)	84, 227, 417
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	285, 528
TscAI	CASTG	2 cut(s)	58, 431
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	58, 431
Van91I	CCANNNNNTGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	2 cut(s)	252, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.