RLG00000036754

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020052
Physical Location & Seq
Reverse (-)
84170163 .. 84170795
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036754

Sequence Viewer

Length: 549 bp
ATGGAATCAATAATCAAAAGGAATAACATCATCGCCGCTGACGTCATCTTCCCTCCGATTCCCCACAGCTCTTCAACCGCCACAATCACCCTCCATGACGATTGCAAAAACCCATTTGCCCCCAGATCATCTCCCTCCCCAACCAAAGTAACCACCTTTATCGACCTCTCCGATGAACCCAACGACGGCAATGGCAACGACGACAAGATTCGGATCCTCCGATTCAAACGCACAGCTCCTCAGCTGCCGCGATCGCCCTCCATGACGATCGCAAAAACCCATCTGCCCCCAGATCATTTCCCTCCCCGACCAAAGTACCCACCTTTATCGACCTCTCCGATGAACCTGATGATGGCGAGATTCGGATCCTCTGATTCAAACCCACCAAAACCCACTTCAAAAAGCGAAGAACAAACCCGTTTACAACCGGGTCCATCTGTGATATTTGCGTCGATGACAAGTTTGGGTACCAATCTTTTCCGATCGAGAATGGTTGAGGCAGTAAGGATTAAGTCTAGTGGGCTAGCTGCCATTGCTATGGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.85

Weight (kDa)

9.92

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036754
rosa_multiflora Rmu_sc0002308.1_g000019
rosa_roxburghii Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 467
AccII CGCG 1 cut(s) 250
AciI CCGC 3 cut(s) 36, 78, 248
AclWI GGATC 4 cut(s) 208, 221, 360, 373
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 317, 469
AfiI CCNNNNNNNGG 2 cut(s) 185, 352
AgsI TTSAA 4 cut(s) 75, 226, 378, 399
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 4 cut(s) 69, 236, 244, 527
AluI AGCT 4 cut(s) 69, 236, 244, 527
AlwI GGATC 4 cut(s) 208, 221, 360, 373
ApeKI GCWGC 2 cut(s) 244, 527
AsiSI GCGATCGC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 299, 332
BamHI GGATCC 2 cut(s) 213, 365
BanI GGYRCC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 231, 514
BccI CCATC 3 cut(s) 288, 346, 442
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 429
BfaI CTAG 2 cut(s) 516, 524
BisI GCNGC 4 cut(s) 36, 245, 248, 528
BlsI GCNGC 4 cut(s) 37, 246, 249, 529
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 4 cut(s) 215, 367, 432, 469
BmrFI CCNGG 1 cut(s) 429
BmtI GCTAGC 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 429
BsaBI GATNNNNATC 2 cut(s) 212, 364
BsaHI GRCGYC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 352
Bse3DI GCAATG 2 cut(s) 196, 531
Bse8I GATNNNNATC 2 cut(s) 212, 364
BseJI GATNNNNATC 2 cut(s) 212, 364
BseLI CCNNNNNNNGG 2 cut(s) 185, 352
BseMI GCAATG 2 cut(s) 196, 531
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 231, 514
Bsh1236I CGCG 1 cut(s) 250
Bsh1285I CGRYCG 3 cut(s) 254, 270, 485
BshNI GGYRCC 1 cut(s) 467
BsiEI CGRYCG 3 cut(s) 254, 270, 485
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 185, 352
Bsp143I GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
BspACI CCGC 3 cut(s) 36, 78, 248
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 215, 367, 432, 469
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 4 cut(s) 208, 221, 360, 373
BspQI GCTCTTC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 467
BsrDI GCAATG 2 cut(s) 196, 531
BssMI GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
BssNI GRCGYC 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 250
BstKTI GATC 7 cut(s) 128, 216, 254, 270, 295, 368, 485
BstMBI GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
BstMCI CGRYCG 3 cut(s) 254, 270, 485
BstMWI GCNNNNNNNGC 2 cut(s) 253, 533
BstSCI CCNGG 1 cut(s) 427
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 231, 514
BstX2I RGATCY 2 cut(s) 213, 365
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 2 cut(s) 213, 365
BtgZI GCGATG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 438
Csp6I GTAC 2 cut(s) 316, 468
CviAII CATG 2 cut(s) 95, 262
CviJI RGCY 5 cut(s) 69, 236, 244, 523, 527
CviKI_1 RGCY 5 cut(s) 69, 236, 244, 523, 527
CviQI GTAC 2 cut(s) 316, 468
DdeI CTNAG 1 cut(s) 240
DpnI GATC 7 cut(s) 127, 215, 253, 269, 294, 367, 484
DpnII GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 431
FaeI CATG 2 cut(s) 98, 265
FaiI YATR 3 cut(s) 96, 263, 539
FatI CATG 2 cut(s) 94, 261
Fnu4HI GCNGC 4 cut(s) 36, 245, 248, 528
Fsp4HI GCNGC 4 cut(s) 36, 245, 248, 528
FspBI CTAG 2 cut(s) 516, 524
GluI GCNGC 4 cut(s) 36, 245, 248, 528
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 98, 265
HinfI GANTC 6 cut(s) 5, 58, 208, 222, 360, 374
HpaII CCGG 1 cut(s) 428
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 8 cut(s) 57, 172, 213, 221, 339, 365, 373, 482
Hpy188III TCNNGA 1 cut(s) 486
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 3 cut(s) 188, 203, 454
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 533
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 98, 265
KpnI GGTACC 1 cut(s) 471
Kzo9I GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 136, 303, 359, 441
Lsp1109I GCAGC 2 cut(s) 231, 514
MaeI CTAG 2 cut(s) 516, 524
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 148
MalI GATC 7 cut(s) 127, 215, 253, 269, 294, 367, 484
MboI GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
MboII GAAGA 3 cut(s) 40, 63, 419
MflI RGATCY 2 cut(s) 213, 365
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 2 cut(s) 38, 244
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 253, 533
NciI CCSGG 1 cut(s) 429
NdeII GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 2 cut(s) 98, 265
NlaIV GGNNCC 4 cut(s) 215, 367, 432, 469
PciSI GCTCTTC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 168, 217, 335
PfeI GAWTC 6 cut(s) 5, 58, 208, 222, 360, 374
PkrI GCNGC 4 cut(s) 37, 246, 249, 529
Ple19I CGATCG 3 cut(s) 254, 270, 485
PspN4I GGNNCC 4 cut(s) 215, 367, 432, 469
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 2 cut(s) 213, 365
PvuI CGATCG 3 cut(s) 254, 270, 485
PvuII CAGCTG 1 cut(s) 244
RgaI GCGATCGC 1 cut(s) 254
RsaI GTAC 2 cut(s) 317, 469
RsaNI GTAC 2 cut(s) 316, 468
RseI CAYNNNNRTG 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 36, 245, 248, 528
Sau3AI GATC 7 cut(s) 125, 213, 251, 267, 292, 365, 482
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 429
SfaAI GCGATCGC 1 cut(s) 254
SgfI GCGATCGC 1 cut(s) 254
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 536
SsiI CCGC 3 cut(s) 36, 78, 248
SspMI CTAG 2 cut(s) 516, 524
StyD4I CCNGG 1 cut(s) 427
TaiI ACGT 1 cut(s) 45
TaqI TCGA 4 cut(s) 162, 329, 452, 485
TauI GCSGC 2 cut(s) 38, 250
TfiI GAWTC 6 cut(s) 5, 58, 208, 222, 360, 374
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 2 cut(s) 244, 527
TspDTI ATGAA 2 cut(s) 189, 356
VpaK11BI GGWCC 1 cut(s) 431
XspI CTAG 2 cut(s) 516, 524
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.