Rroxscaffold_7G00160210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020052
Physical Location & Seq
Reverse (-)
3191362 .. 3195223
3862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160210.1

Sequence Viewer

Length: 501 bp
ATGGCACGTGAGCGGAAAAACAGAATCGAGACCACTTCCGGGAGCCAGCCACTCTCGTTCTCCGAACAATTGAATCAAGAACTAGAAAAGAACATCATCGTTGACGACGACAAGACCAACGCTGATGTAGTCTTCCCTCCAATTCCCCACACCTCCTCGGTCACCGCGATCGTCCTCCACGATGACCGCAAAGACCCATCCGCCCCGTATCATCTCCCTCCCCGACCAAAATACCCACCTTTATCGACCTCTCCGATGAACCCAACTACGGCGACGGCGAGGAGATTCGGATCCTCGTATTCAAACCCACCAAAATCCACTTCAAAAAGCGAAGAACAAACTCGTTTACAACTAGGTCCGTATCCGAACCGGGCCAATCCTCCTCTCGATTCTCTCACCGACTACCCGCCATTCGTTGTGATATTTGCTCCGAAGGCAAGTTTGGGTACTAATCTTTTCCAATCGAGAATTGCAACCATGTGTATTGCTCCGATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.34

Weight (kDa)

8.73

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036754
rosa_multiflora Rmu_sc0002308.1_g000019
rosa_roxburghii Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 13
AccII CGCG 1 cut(s) 167
AciI CCGC 5 cut(s) 13, 165, 187, 201, 407
AclWI GGATC 2 cut(s) 285, 298
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 39, 268
AgsI TTSAA 3 cut(s) 73, 303, 324
AjuI GAANNNNNNNTTGG 4 cut(s) 304, 336, 425, 457
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 285, 298
AoxI GGCC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 356, 372
AsuC2I CCSGG 2 cut(s) 40, 371
AsuHPI GGTGA 2 cut(s) 154, 388
AvaII GGWCC 1 cut(s) 356
BamHI GGATCC 1 cut(s) 290
BbrPI CACGTG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 124
BccI CCATC 1 cut(s) 205
BceAI ACGGC 2 cut(s) 285, 291
BciVI GTATCC 1 cut(s) 372
BcnI CCSGG 2 cut(s) 40, 371
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 83, 353
BfuI GTATCC 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 40, 371
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 356, 372
BmiI GGNNCC 2 cut(s) 44, 292
BmrFI CCNGG 2 cut(s) 40, 371
BpiI GAAGAC 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 40, 371
BsaAI YACGTR 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 268
Bse8I GATNNNNATC 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 39, 268
BseRI GAGGAG 3 cut(s) 145, 295, 372
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 39, 370
BslI CCNNNNNNNGG 2 cut(s) 39, 268
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 374
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 168, 290
BspACI CCGC 5 cut(s) 13, 165, 187, 201, 407
BspANI GGCC 1 cut(s) 374
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 44, 292
BspPI GGATC 2 cut(s) 285, 298
BspTNI GGTCTC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 168, 290
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 171, 293
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 168, 290
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 38, 369
BstUI CGCG 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 356, 372
Csp6I GTAC 1 cut(s) 447
CviAII CATG 1 cut(s) 478
CviJI RGCY 3 cut(s) 45, 49, 374
CviKI_1 RGCY 3 cut(s) 45, 49, 374
CviQI GTAC 1 cut(s) 447
DpnI GATC 2 cut(s) 170, 292
DpnII GATC 2 cut(s) 168, 290
EciI GGCGGA 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 356
Eco72I CACGTG 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
FaeI CATG 1 cut(s) 481
FaiI YATR 1 cut(s) 479
FatI CATG 1 cut(s) 477
FauI CCCGC 1 cut(s) 414
FokI GGATG 1 cut(s) 184
FspBI CTAG 2 cut(s) 83, 353
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 39, 370
Hin1II CATG 1 cut(s) 481
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 24, 73, 285, 389
HpaII CCGG 2 cut(s) 39, 370
HphI GGTGA 2 cut(s) 154, 388
Hpy166II GTNNAC 2 cut(s) 103, 347
Hpy188I TCNGA 6 cut(s) 64, 255, 290, 366, 432, 492
Hpy188III TCNNGA 4 cut(s) 28, 77, 386, 465
Hpy8I GTNNAC 2 cut(s) 103, 347
Hpy99I CGWCG 2 cut(s) 110, 277
HpyAV CCTTC 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 481
Kzo9I GATC 2 cut(s) 168, 290
LmnI GCTCC 3 cut(s) 42, 433, 493
LpnPI CCDG 3 cut(s) 52, 59, 383
MaeI CTAG 2 cut(s) 83, 353
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 170, 292
MbiI CCGCTC 1 cut(s) 13
MboI GATC 2 cut(s) 168, 290
MboII GAAGA 2 cut(s) 124, 344
MfeI CAATTG 1 cut(s) 68
MflI RGATCY 1 cut(s) 290
MluCI AATT 3 cut(s) 68, 141, 468
MspI CCGG 2 cut(s) 39, 370
MspR9I CCNGG 2 cut(s) 40, 371
MunI CAATTG 1 cut(s) 68
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 434
NciI CCSGG 2 cut(s) 40, 371
NdeII GATC 2 cut(s) 168, 290
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 2 cut(s) 44, 292
NmuCI GTSAC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 5 cut(s) 105, 164, 177, 251, 275
PfeI GAWTC 4 cut(s) 24, 73, 285, 389
PfoI TCCNGGA 1 cut(s) 38
Ple19I CGATCG 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PspCI CACGTG 1 cut(s) 8
PspEI GGTNACC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 44, 292
PspPI GGNCC 2 cut(s) 356, 372
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 171
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
Sau3AI GATC 2 cut(s) 168, 290
Sau96I GGNCC 2 cut(s) 356, 372
ScrFI CCNGG 2 cut(s) 40, 371
SetI ASST 5 cut(s) 10, 155, 241, 251, 358
SinI GGWCC 1 cut(s) 356
Sse9I AATT 3 cut(s) 68, 141, 468
SsiI CCGC 5 cut(s) 13, 165, 187, 201, 407
SspMI CTAG 2 cut(s) 83, 353
StyD4I CCNGG 2 cut(s) 38, 369
TaiI ACGT 1 cut(s) 10
TaqI TCGA 4 cut(s) 27, 245, 387, 464
TaqII GACCGA 1 cut(s) 148
TasI AATT 3 cut(s) 68, 141, 468
TfiI GAWTC 4 cut(s) 24, 73, 285, 389
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 356
XspI CTAG 2 cut(s) 83, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.