Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002308.1

Orthogroup ID

OG0020052

Physical Location & Seq

Genomic Coordinates Reverse (-)

89312 .. 90046

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002308.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgttagtccaaagtcatccttcatctccgtctcaactaagatgctctccagctcccctttgttcaactcgtcaaagatttcggccaactccgaattcgaaagcccaccgatgttcttcaatacgtcgtaggaagaacatcatcgccgatgacgataacgctgacgctgacgtcatcttccctccgattccccacagcacctcagccgcctcgatcgccctccacgacgattgcaaagacctatctgcccccaaatcatctccctccccgaccaaagtacccacctttatcgacctctctgatgaacctgacgacatcgacgagattcggatcctccgattcaaacccaccaaaacccacttcaaaaagcgaaggacaaacccgtttacaacagggttcgtatcagaaccgggccaatcctcctccgattctctcactgactacccgccatttgtctgtgatatttgcgccgacgacaagtttgggtaccaatcttttccaatcgagaactgcaaccatgtgtattgctctgattgtgtgatcaactacatcgattccaagctccaaggaaatgaacccacaatttggacccgccttcaccacgcacagcccgttctccacctgggcaaccttgtggagaatatcctaaacgttggagtacgtctggtgagagagagagagagagagtgtgtgcgtgtgcgtgttttagttgtaggcagcacaaggggtgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

244

Amino Acids

27.33

Weight (kDa)

8.04

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020052)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036754
rosa_multiflora	Rmu_sc0002308.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha	Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	174
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	3 cut(s)	207, 446, 592
AclI	AACGTT	1 cut(s)	651
AclWI	GGATC	2 cut(s)	325, 338
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	279, 488, 660
AfiI	CCNNNNNNNGG	1 cut(s)	585
AgsI	TTSAA	4 cut(s)	66, 120, 343, 364
AjnI	CCWGG	1 cut(s)	621
AjuI	GAANNNNNNNTTGG	4 cut(s)	79, 111, 344, 376
AluBI	AGCT	2 cut(s)	53, 562
AluI	AGCT	2 cut(s)	53, 562
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	325, 338
AoxI	GGCC	2 cut(s)	83, 412
ApeKI	GCWGC	1 cut(s)	717
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp718I	GGTACC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	412, 588
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	590, 679
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	588
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BamHI	GGATCC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	486
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	729
BciT130I	CCWGG	1 cut(s)	623
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	36
BisI	GCNGC	2 cut(s)	207, 718
BlsI	GCNGC	2 cut(s)	208, 719
Bme1390I	CCNGG	2 cut(s)	411, 623
Bme18I	GGWCC	1 cut(s)	588
BmgT120I	GGNCC	2 cut(s)	412, 588
BmiI	GGNNCC	3 cut(s)	332, 488, 590
BmrFI	CCNGG	2 cut(s)	411, 623
BmsI	GCATC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	552
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	565, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	623
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	565, 622
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	85, 414
BshNI	GGYRCC	1 cut(s)	486
BshVI	ATCGAT	1 cut(s)	552
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	85, 414
Bsp119I	TTCGAA	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	213, 330, 540
BspACI	CCGC	3 cut(s)	207, 446, 592
BspANI	GGCC	2 cut(s)	85, 414
BspCNI	CTCAG	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	332, 488, 590
BspPI	GGATC	2 cut(s)	325, 338
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	565, 622
BssMI	GATC	3 cut(s)	213, 330, 540
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	623
BstACI	GRCGYC	1 cut(s)	171
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	38, 202
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	3 cut(s)	216, 333, 543
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	213, 330, 540
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	409, 621
BstV1I	GCAGC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	85, 414
BsuTUI	ATCGAT	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	412, 588
ClaI	ATCGAT	1 cut(s)	552
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	278, 487, 659
CspCI	CAANNNNNGTGG	2 cut(s)	212, 247
CviAII	CATG	1 cut(s)	518
CviJI	RGCY	7 cut(s)	53, 85, 104, 206, 414, 562, 610
CviKI_1	RGCY	7 cut(s)	53, 85, 104, 206, 414, 562, 610
CviQI	GTAC	3 cut(s)	278, 487, 659
DdeI	CTNAG	2 cut(s)	38, 202
DpnI	GATC	3 cut(s)	215, 332, 542
DpnII	GATC	3 cut(s)	213, 330, 540
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	1 cut(s)	521
FaiI	YATR	1 cut(s)	519
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	1 cut(s)	517
FauI	CCCGC	2 cut(s)	453, 599
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	207, 718
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	2 cut(s)	207, 718
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	2 cut(s)	207, 718
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	85, 414
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	521
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	5 cut(s)	187, 325, 339, 428, 554
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	590, 679
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	8 cut(s)	93, 186, 301, 330, 338, 406, 427, 532
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	4 cut(s)	129, 230, 323, 476
HpyAV	CCTTC	3 cut(s)	30, 366, 605
HpyCH4IV	ACGT	4 cut(s)	124, 171, 651, 661
HpyCH4V	TGCA	2 cut(s)	234, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	38, 202
HpySE526I	ACGT	4 cut(s)	124, 171, 651, 661
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	521
HspAI	GCGC	1 cut(s)	468
KpnI	GGTACC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	213, 330, 540
LmnI	GCTCC	2 cut(s)	58, 567
LpnPI	CCDG	7 cut(s)	63, 321, 378, 423, 608, 635, 650
Lsp1109I	GCAGC	1 cut(s)	729
LweI	GCATC	1 cut(s)	32
MaeII	ACGT	4 cut(s)	124, 171, 651, 661
MalI	GATC	3 cut(s)	215, 332, 542
MboI	GATC	3 cut(s)	213, 330, 540
MboII	GAAGA	3 cut(s)	108, 145, 169
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	2 cut(s)	94, 582
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	9 cut(s)	192, 211, 220, 230, 274, 305, 344, 430, 433
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	411, 623
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	213, 330, 540
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	3 cut(s)	332, 488, 590
NspV	TTCGAA	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	5 cut(s)	150, 222, 318, 334, 609
PfeI	GAWTC	5 cut(s)	187, 325, 339, 428, 554
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	208, 719
Ple19I	CGATCG	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	332, 488, 590
PspPI	GGNCC	2 cut(s)	412, 588
PsuI	RGATCY	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	279, 488, 660
RsaNI	GTAC	3 cut(s)	278, 487, 659
SatI	GCNGC	2 cut(s)	207, 718
Sau3AI	GATC	3 cut(s)	213, 330, 540
Sau96I	GGNCC	2 cut(s)	412, 588
ScrFI	CCNGG	2 cut(s)	411, 623
SfaNI	GCATC	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	588
Sse9I	AATT	2 cut(s)	94, 582
SsiI	CCGC	3 cut(s)	207, 446, 592
StyD4I	CCNGG	2 cut(s)	409, 621
StyI	CCWWGG	1 cut(s)	565
TaiI	ACGT	4 cut(s)	127, 174, 654, 664
TaqI	TCGA	6 cut(s)	98, 212, 291, 318, 504, 552
TasI	AATT	2 cut(s)	94, 582
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	187, 325, 339, 428, 554
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	717
TspDTI	ATGAA	3 cut(s)	12, 318, 588
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	1 cut(s)	94
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.