Rroxscaffold_1G00019710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020052
Physical Location & Seq
Reverse (-)
24061728 .. 24067201
5474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019710.1

Sequence Viewer

Length: 474 bp
ATGGCTGTTTGGAAATCACTTGGCACACCCAACTTCTTTCTCTTCCAACCAATAGCTGCCACCAGTCCAAAGTCAAAGACTCAGAAACCCCAACTTACCCAACGGCGCCGAAGGAACCCAAAGCCAACACAGGCCGAAATCAAGAAGAACATCATCGCCACCGACGATGACAACATCGACGCCGACGTCGTCTTCTCTCCGATTCCCCACAGCTCCTCAACCGCAACGATCGCCCTCCACGATGACCACAAAGACCCATCTGCCCCCGGATCATCTCCCTCCCCAACCAAAATACCCACCTTTATCAACCTCTCGATGAACTCGATGACGGCGACGAGATTCGAATCCTCCGATTCAAACCCACCAAAACCCACTTCAAAAAGCAAAGAACAAACCCGTTTACAACCGGGTCCGTATCCGAACTGGGCCAATCCTCCTCCGATTCTCTCACCGATTACTCGCCATTCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

9.93

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036754
rosa_multiflora Rmu_sc0002308.1_g000019
rosa_roxburghii Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AatII GACGTC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 105
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 277
AcyI GRCGYC 3 cut(s) 106, 180, 186
AgsI TTSAA 2 cut(s) 357, 378
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 2 cut(s) 56, 213
AluI AGCT 2 cut(s) 56, 213
AlwI GGATC 1 cut(s) 277
AoxI GGCC 2 cut(s) 132, 426
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 410, 426
AsuC2I CCSGG 2 cut(s) 267, 408
AsuHPI GGTGA 1 cut(s) 441
AsuII TTCGAA 1 cut(s) 342
AvaII GGWCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 265
BceAI ACGGC 2 cut(s) 119, 345
BciVI GTATCC 1 cut(s) 426
BcnI CCSGG 2 cut(s) 267, 408
BfoI RGCGCY 1 cut(s) 109
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 267, 408
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 426
BmiI GGNNCC 3 cut(s) 107, 116, 411
BmrFI CCNGG 2 cut(s) 267, 408
BmrI ACTGGG 1 cut(s) 433
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 267, 408
BsaBI GATNNNNATC 1 cut(s) 343
BsaHI GRCGYC 3 cut(s) 106, 180, 186
BsaJI CCNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 63, 428
Bse8I GATNNNNATC 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 343
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 63, 428
BseRI GAGGAG 2 cut(s) 205, 426
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 134, 428
BshNI GGYRCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 267, 407
BsnI GGCC 2 cut(s) 134, 428
Bsp119I TTCGAA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 228, 269
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 134, 428
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 107, 116, 411
BspPI GGATC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 63, 428
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 228, 269
BssNI GRCGYC 3 cut(s) 106, 180, 186
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 3 cut(s) 106, 180, 186
BstBI TTCGAA 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 231, 272
BstMBI GATC 2 cut(s) 228, 269
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 265, 406
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 184
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 134, 428
BtgZI GCGATG 1 cut(s) 139
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 410, 426
CseI GACGC 1 cut(s) 188
CviJI RGCY 6 cut(s) 5, 56, 124, 134, 213, 428
CviKI_1 RGCY 6 cut(s) 5, 56, 124, 134, 213, 428
DdeI CTNAG 1 cut(s) 81
DinI GGCGCC 1 cut(s) 107
DpnI GATC 2 cut(s) 230, 271
DpnII GATC 2 cut(s) 228, 269
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 410
EgeI GGCGCC 1 cut(s) 107
EheI GGCGCC 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 2 cut(s) 134, 428
HapII CCGG 2 cut(s) 267, 407
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 3 cut(s) 106, 180, 186
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 6 cut(s) 79, 202, 339, 344, 353, 442
HpaII CCGG 2 cut(s) 267, 407
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 5 cut(s) 84, 201, 352, 420, 441
Hpy188III TCNNGA 2 cut(s) 142, 313
Hpy8I GTNNAC 1 cut(s) 401
Hpy99I CGWCG 5 cut(s) 167, 182, 188, 191, 337
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 3 cut(s) 106, 180, 186
HspAI GCGC 1 cut(s) 106
KasI GGCGCC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 228, 269
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 76, 116, 280, 409, 420
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 186
MalI GATC 2 cut(s) 230, 271
MboI GATC 2 cut(s) 228, 269
MboII GAAGA 3 cut(s) 34, 157, 184
Mly113I GGCGCC 1 cut(s) 106
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 226, 245, 289, 320, 358, 444, 447
MspI CCGG 2 cut(s) 267, 407
MspR9I CCNGG 2 cut(s) 267, 408
MwoI GCNNNNNNNGC 1 cut(s) 230
NarI GGCGCC 1 cut(s) 106
NciI CCSGG 2 cut(s) 267, 408
NdeII GATC 2 cut(s) 228, 269
NlaIV GGNNCC 3 cut(s) 107, 116, 411
NspV TTCGAA 1 cut(s) 342
PcsI WCGNNNNNNNCGW 7 cut(s) 162, 183, 186, 237, 320, 329, 348
PfeI GAWTC 5 cut(s) 202, 339, 344, 353, 442
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 58
Ple19I CGATCG 1 cut(s) 231
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 107, 116, 411
PspPI GGNCC 2 cut(s) 410, 426
PsyI GACNNNGTC 1 cut(s) 188
PvuI CGATCG 1 cut(s) 231
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 228, 269
Sau96I GGNCC 2 cut(s) 410, 426
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 267, 408
SetI ASST 5 cut(s) 58, 189, 215, 302, 312
SfoI GGCGCC 1 cut(s) 107
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 1 cut(s) 410
SsiI CCGC 1 cut(s) 222
SspDI GGCGCC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 265, 406
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 177, 314, 323, 342
TfiI GAWTC 5 cut(s) 202, 339, 344, 353, 442
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 332
TspGWI ACGGA 1 cut(s) 402
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 410
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.