Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020052

Physical Location & Seq

Genomic Coordinates Forward (+)

1140241 .. 1140654

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTATCAGAGTCTCCATGGCTCACACTGCTGCTTCTTGGATGGATTTTGGGCGATTTCCAGTCCAAGATTCGAGCTCCTTCAATTATTTTGGTTGATTATATCCTCTTTACTGAACTTGTTCTTCCCTCAATACGTCGTCGTAGGAAGAACATCATCGCCGATGACGACAACGCCAATGCTGACGTCATCTTCCCTCCGATTCCCCACAGCTCCTCAGCCGCCGCAATCGCCCTGCACGACGATCGCAAAGACCCATCTGCCCCAAGATCATCTCCCTCCCCGACCAAAGTACCCACCTTTATCGACCTCTCCGATGAACCCGACGAGGACGAGATTCGGATCCTCCGATTCAAACCCAAAGTACCCCTTTACAACCGGGTCTGTATCCGAACCGGGCCAATCCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

137

Amino Acids

15.39

Weight (kDa)

6.09

Isoelectric Point (pI)

71.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020052)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036754
rosa_multiflora	Rmu_sc0002308.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha	Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AciI	CCGC	2 cut(s)	222, 225
AclWI	GGATC	2 cut(s)	337, 350
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	294, 366
AgsI	TTSAA	2 cut(s)	84, 355
AluBI	AGCT	2 cut(s)	77, 213
AluI	AGCT	2 cut(s)	77, 213
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	337, 350
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	380, 397
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BamHI	GGATCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	36, 265
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	2 cut(s)	380, 397
BcoDI	GTCTC	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	3 cut(s)	32, 222, 225
BlsI	GCNGC	3 cut(s)	33, 223, 226
Bme1390I	CCNGG	2 cut(s)	380, 397
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	380, 397
Bpu10I	CCTNAGC	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	380, 397
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	205, 398
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	379, 396
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	244, 269, 342
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	2 cut(s)	222, 225
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	337, 350
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	3 cut(s)	244, 269, 342
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	247, 272, 345
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	244, 269, 342
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 230
BstSCI	CCNGG	2 cut(s)	378, 395
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	293, 365
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	5 cut(s)	22, 77, 213, 221, 400
CviKI_1	RGCY	5 cut(s)	22, 77, 213, 221, 400
CviQI	GTAC	2 cut(s)	293, 365
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	3 cut(s)	246, 271, 344
DpnII	GATC	3 cut(s)	244, 269, 342
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	1 cut(s)	21
FaiI	YATR	2 cut(s)	19, 102
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	32, 222, 225
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	32, 222, 225
GluI	GCNGC	3 cut(s)	32, 222, 225
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	2 cut(s)	379, 396
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	21
HinfI	GANTC	5 cut(s)	11, 70, 202, 337, 351
HpaII	CCGG	2 cut(s)	379, 396
Hpy188I	TCNGA	7 cut(s)	10, 201, 316, 342, 350, 392, 413
Hpy99I	CGWCG	4 cut(s)	141, 144, 245, 329
HpyAV	CCTTC	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	136, 186
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 230
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	2 cut(s)	136, 186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	244, 269, 342
LmnI	GCTCC	2 cut(s)	82, 218
LpnPI	CCDG	4 cut(s)	74, 248, 392, 409
Lsp1109I	GCAGC	1 cut(s)	18
MaeII	ACGT	2 cut(s)	136, 186
MalI	GATC	3 cut(s)	246, 271, 344
MboI	GATC	3 cut(s)	244, 269, 342
MboII	GAAGA	3 cut(s)	116, 160, 184
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	8 cut(s)	116, 139, 207, 226, 289, 320, 322, 356
MroXI	GAANNNNTTC	1 cut(s)	120
MspI	CCGG	2 cut(s)	379, 396
MspR9I	CCNGG	2 cut(s)	380, 397
MwoI	GCNNNNNNNGC	2 cut(s)	28, 230
NciI	CCSGG	2 cut(s)	380, 397
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	244, 269, 342
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 237, 312, 346
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	70, 202, 337, 351
PkrI	GCNGC	3 cut(s)	33, 223, 226
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	294, 366
RsaNI	GTAC	2 cut(s)	293, 365
SacI	GAGCTC	1 cut(s)	79
SatI	GCNGC	3 cut(s)	32, 222, 225
Sau3AI	GATC	3 cut(s)	244, 269, 342
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	380, 397
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	79, 139, 189, 215, 302, 312
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	222, 225
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	378, 395
StyI	CCWWGG	1 cut(s)	17
TaiI	ACGT	2 cut(s)	139, 189
TaqI	TCGA	2 cut(s)	73, 306
TasI	AATT	1 cut(s)	84
TauI	GCSGC	2 cut(s)	224, 227
TfiI	GAWTC	4 cut(s)	70, 202, 337, 351
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.