Rh4DG078400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0020052
Physical Location & Seq
Forward (+)
11661825 .. 11662430
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG078400.1

Sequence Viewer

Length: 606 bp
ATGAATTGTTCCACTCGTCAAAGATTTCGGCCAACTCCAAATCGAAAGCTCACCGATGTTCTTCAATACGTCGTTAGGAAGAACATCATCGCCGACGACGACAACGTCGACGCTGGCGTCATCTTCCCTCCAATTCCCCACAGCTCCTCAGCCGCCACGATCGCCCTCCACGACGATTGCAAAAACCCATCTGCCCCTAGATCATCTCCCTCCCCGACCAAAGTACCCACCTTTATCGACCTCTCCGATGAACCCGACGACGAGATTCGGATCCTCCGATTCAAACCCACAACTCCTCAGCCGCCGCGATTACCCTCCACGACGATGGCAAAAACCTATCTGCCCTCAGACCATCTCCCTCCCCGACCAAAGTACCCACCATTATCGACCTCTCCTATGAACCCGACGACGGCGAGATTCGGATCCTCCGATTCAAACCCACCAAAACCCACTTCAAAAAGCGAAGAACAAACCCGTTTAAAACCGGGTCCGTCTGTGATATTTGCGCCGACGACAAGTTTAGGTACCAATCTTTTCCGATCGAGAATGATTGAGGCAATAAGGATTGAATTGAGTGGGCTAGCTGCCATTGCTATGGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.0

Weight (kDa)

9.55

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036754
rosa_multiflora Rmu_sc0002308.1_g000019
rosa_roxburghii Rroxscaffold_1G00019710 Rroxscaffold_7G00160210
rosa_samantha Rh2BG015300 Rh4CG279900 Rh4DG078400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 104, 116
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 153, 302, 305
AclWI GGATC 4 cut(s) 265, 278, 417, 430
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 3 cut(s) 225, 374, 526
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 5 cut(s) 65, 283, 435, 456, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 3 cut(s) 49, 144, 584
AluI AGCT 3 cut(s) 49, 144, 584
AlwI GGATC 4 cut(s) 265, 278, 417, 430
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 43
AsuNHI GCTAGC 1 cut(s) 580
AvaII GGWCC 1 cut(s) 488
BaeI ACNNNNGTAYC 4 cut(s) 207, 240, 356, 389
BamHI GGATCC 2 cut(s) 270, 422
BanI GGYRCC 1 cut(s) 524
BbvCI CCTCAGC 2 cut(s) 148, 297
BbvI GCAGC 1 cut(s) 571
BccI CCATC 3 cut(s) 196, 319, 360
BceAI ACGGC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 486
BfaI CTAG 2 cut(s) 198, 581
BisI GCNGC 4 cut(s) 153, 302, 305, 585
BlsI GCNGC 4 cut(s) 154, 303, 306, 586
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 4 cut(s) 272, 424, 489, 526
BmrFI CCNGG 1 cut(s) 486
BmtI GCTAGC 1 cut(s) 584
Bpu10I CCTNAGC 2 cut(s) 148, 297
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 2 cut(s) 269, 421
BsaHI GRCGYC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse3DI GCAATG 1 cut(s) 588
Bse8I GATNNNNATC 2 cut(s) 269, 421
BseJI GATNNNNATC 2 cut(s) 269, 421
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 3 cut(s) 162, 311, 360
BseRI GAGGAG 2 cut(s) 136, 285
BseXI GCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 2 cut(s) 162, 542
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 524
BsiEI CGRYCG 2 cut(s) 162, 542
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 409
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 5 cut(s) 159, 200, 270, 422, 539
BspACI CCGC 3 cut(s) 153, 302, 305
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 161, 310, 359
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 272, 424, 489, 526
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 4 cut(s) 265, 278, 417, 430
BspT107I GGYRCC 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 588
BssMI GATC 5 cut(s) 159, 200, 270, 422, 539
BssNI GRCGYC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 115, 582
BstDEI CTNAG 3 cut(s) 148, 297, 346
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 5 cut(s) 162, 203, 273, 425, 542
BstMBI GATC 5 cut(s) 159, 200, 270, 422, 539
BstMCI CGRYCG 2 cut(s) 162, 542
BstMWI GCNNNNNNNGC 2 cut(s) 161, 590
BstSCI CCNGG 1 cut(s) 484
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 571
BstX2I RGATCY 2 cut(s) 270, 422
BstXI CCANNNNNNTGG 2 cut(s) 325, 595
BstYI RGATCY 2 cut(s) 270, 422
BsuRI GGCC 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 115, 582
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 488
CseI GACGC 2 cut(s) 106, 119
Csp6I GTAC 3 cut(s) 224, 373, 525
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviJI RGCY 7 cut(s) 31, 49, 144, 152, 301, 580, 584
CviKI_1 RGCY 7 cut(s) 31, 49, 144, 152, 301, 580, 584
CviQI GTAC 3 cut(s) 224, 373, 525
DdeI CTNAG 3 cut(s) 148, 297, 346
DpnI GATC 5 cut(s) 161, 202, 272, 424, 541
DpnII GATC 5 cut(s) 159, 200, 270, 422, 539
DraI TTTAAA 1 cut(s) 480
DrdI GACNNNNNNGTC 2 cut(s) 104, 116
DseDI GACNNNNNNGTC 2 cut(s) 104, 116
EaeI YGGCCR 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 488
FaiI YATR 2 cut(s) 398, 596
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 153, 302, 305, 585
Fsp4HI GCNGC 4 cut(s) 153, 302, 305, 585
FspBI CTAG 2 cut(s) 198, 581
GlaI GCGC 1 cut(s) 507
GluI GCNGC 4 cut(s) 153, 302, 305, 585
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 485
HgaI GACGC 2 cut(s) 106, 119
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 265, 279, 417, 431, 600
HpaII CCGG 1 cut(s) 485
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 8 cut(s) 247, 270, 278, 349, 422, 430, 539, 605
Hpy188III TCNNGA 1 cut(s) 543
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 69, 105
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 590
HpyF3I CTNAG 3 cut(s) 148, 297, 346
HpySE526I ACGT 2 cut(s) 69, 105
Hsp92I GRCGYC 1 cut(s) 117
HspAI GCGC 1 cut(s) 506
KpnI GGTACC 1 cut(s) 528
Kzo9I GATC 5 cut(s) 159, 200, 270, 422, 539
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 2 cut(s) 99, 498
Lsp1109I GCAGC 1 cut(s) 571
MaeI CTAG 2 cut(s) 198, 581
MaeII ACGT 2 cut(s) 69, 105
MalI GATC 5 cut(s) 161, 202, 272, 424, 541
MboI GATC 5 cut(s) 159, 200, 270, 422, 539
MboII GAAGA 4 cut(s) 53, 91, 115, 476
MflI RGATCY 2 cut(s) 270, 422
MluCI AATT 3 cut(s) 4, 132, 569
MseI TTAA 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 323, 593
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 161, 590
NciI CCSGG 1 cut(s) 486
NdeII GATC 5 cut(s) 159, 200, 270, 422, 539
NheI GCTAGC 1 cut(s) 580
NlaIV GGNNCC 4 cut(s) 272, 424, 489, 526
PcsI WCGNNNNNNNCGW 8 cut(s) 96, 102, 105, 114, 168, 243, 274, 426
PfeI GAWTC 4 cut(s) 265, 279, 417, 431
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 154, 303, 306, 586
Ple19I CGATCG 2 cut(s) 162, 542
PspN4I GGNNCC 4 cut(s) 272, 424, 489, 526
PspPI GGNCC 1 cut(s) 488
PsuI RGATCY 2 cut(s) 270, 422
PsyI GACNNNGTC 1 cut(s) 104
PvuI CGATCG 2 cut(s) 162, 542
RsaI GTAC 3 cut(s) 225, 374, 526
RsaNI GTAC 3 cut(s) 224, 373, 525
RseI CAYNNNNRTG 2 cut(s) 323, 593
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 4 cut(s) 153, 302, 305, 585
Sau3AI GATC 5 cut(s) 159, 200, 270, 422, 539
Sau96I GGNCC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 486
SgrDI CGTCGACG 1 cut(s) 107
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 323, 593
Sse9I AATT 3 cut(s) 4, 132, 569
SsiI CCGC 3 cut(s) 153, 302, 305
SspMI CTAG 2 cut(s) 198, 581
StyD4I CCNGG 1 cut(s) 484
TaiI ACGT 2 cut(s) 72, 108
TaqI TCGA 5 cut(s) 43, 108, 237, 386, 542
TasI AATT 3 cut(s) 4, 132, 569
TauI GCSGC 3 cut(s) 155, 304, 307
TfiI GAWTC 4 cut(s) 265, 279, 417, 431
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseI GCWGC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 17, 264, 413
TspGWI ACGGA 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 198, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.