Rmu_co7963982.1_g000001

Pyrophosphate-energized vacuolar membrane proton

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7963982.1
OG0019816
Physical Location & Seq
Forward (+)
1 .. 394
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7963982.1_g000001.1.cds

Sequence Viewer

Length: 264 bp
atcgccatctctgcatccaacaccggtggcgcttgggacaatgccaagaagtatattgaggccggggcttcagaacatgcaaggactcttggtcccaagggatcagatccacacaaagcagctgtcattggtgacaccgtcggagaccctctcaaggacacatccggcccatctctcaacatcctcatcaagctgatggctgtcgagtccctagtgtttgcacctttcttcgccacacatggcggtctccttttcaagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
H_PPase

Protein Analysis

87

Amino Acids

8.98

Weight (kDa)

7.03

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019816)

Species Orthologous Gene IDs
pyrus_communis pycom04g17160 pycom12g19450 pycom17g22040
rosa_multiflora Rmu_co7963982.1_g000001 Rmu_sc0024704.1_g000001
rosa_samantha Rh2AG027300 Rh2AG375200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclWI GGATC 2 cut(s) 101, 109
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 256
AhdI GACNNNNNGTC 1 cut(s) 90
AluBI AGCT 3 cut(s) 122, 193, 259
AluI AGCT 3 cut(s) 122, 193, 259
Alw26I GTCTC 2 cut(s) 138, 251
AlwI GGATC 2 cut(s) 101, 109
AoxI GGCC 2 cut(s) 60, 166
ApeKI GCWGC 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AsiGI ACCGGT 1 cut(s) 23
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 92, 167
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 131
BccI CCATC 3 cut(s) 14, 178, 190
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 138, 251
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 92
BmeRI GACNNNNNGTC 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 92, 167
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 64
BsaI GGTCTC 2 cut(s) 138, 251
BsaJI CCNNGG 2 cut(s) 63, 96
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 63, 96
BseGI GGATG 3 cut(s) 14, 161, 180
BseLI CCNNNNNNNGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 62, 168
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 3 cut(s) 24, 63, 165
BslFI GGGAC 3 cut(s) 50, 78, 193
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 138, 251
BsmFI GGGAC 3 cut(s) 50, 78, 193
BsnI GGCC 2 cut(s) 62, 168
Bso31I GGTCTC 2 cut(s) 138, 251
Bsp143I GATC 2 cut(s) 101, 106
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 62, 168
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 101, 109
BspTNI GGTCTC 2 cut(s) 138, 251
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 63, 96
BssMI GATC 2 cut(s) 101, 106
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 139
BstF5I GGATG 3 cut(s) 14, 161, 180
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 104, 109
BstMAI GTCTC 2 cut(s) 138, 251
BstMBI GATC 2 cut(s) 101, 106
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 62, 168
BtsCI GGATG 3 cut(s) 14, 161, 180
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 92, 167
CspAI ACCGGT 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 77, 239
CviJI RGCY 7 cut(s) 62, 68, 122, 168, 193, 200, 259
CviKI_1 RGCY 7 cut(s) 62, 68, 122, 168, 193, 200, 259
DpnI GATC 2 cut(s) 103, 108
DpnII GATC 2 cut(s) 101, 106
DriI GACNNNNNGTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 2 cut(s) 138, 251
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 80, 242
FaiI YATR 3 cut(s) 54, 78, 240
FaqI GGGAC 3 cut(s) 50, 78, 193
FatI CATG 2 cut(s) 76, 238
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 148, 167
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 62, 168
HapII CCGG 3 cut(s) 24, 63, 165
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 80, 242
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 85, 206
HpaII CCGG 3 cut(s) 24, 63, 165
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 3 cut(s) 73, 106, 143
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 14, 80, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 80, 242
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 101, 106
LpnPI CCDG 3 cut(s) 37, 76, 178
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 103, 108
MboI GATC 2 cut(s) 101, 106
MboII GAAGA 1 cut(s) 220
MflI RGATCY 1 cut(s) 106
MlyI GAGTC 2 cut(s) 79, 215
MmeI TCCRAC 2 cut(s) 42, 121
MnlI CCTC 3 cut(s) 52, 159, 194
MseI TTAA 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 24, 63, 165
MspR9I CCNGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 101, 106
NlaIII CATG 2 cut(s) 80, 242
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 79, 214
PpsI GAGTC 2 cut(s) 79, 214
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 92, 167
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 101, 106
Sau96I GGNCC 2 cut(s) 92, 167
SchI GAGTC 2 cut(s) 79, 215
ScrFI CCNGG 1 cut(s) 64
SetI ASST 4 cut(s) 124, 195, 226, 261
SfaNI GCATC 1 cut(s) 23
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 204
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 131
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 92
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.