Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019816

Physical Location & Seq

Genomic Coordinates Forward (+)

56115385 .. 56117191

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG375200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTATGGCATTGCAGTGGCTGCTCTTGGGATGCTGAGCACCATTGCTACAGGGTTGGCAATTGATGCCTACGGGCCCATCAGTGACAATGCTGGAGGTATTGCTGAAATGGCTGGCATGAGCCATCGAATCCGTGAGAGAACTGATGCTCTTGATGCTGCTGGGAATACCACTGCTGCAATTGGAAAGGGATTTGCTATTGGATCTGCTGCTTTGGTGTCTTTGGCACTATTTGGTGCCTTTGTCAGTCGTGCAGCAATTTCAACAGTTGATGTCCTAACCCCAAAGGTCTTTATCGGATTGATCGTGGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACCATGAAGAGTGTGGGAAGTGCAGCTCTGAAAATGGTTGAGGAAGTTCGCAGGCAGTTCAATACCATTCCAGGACTCATGGAGGGTCTTGCCAAGCCCGACTATGCTACCTGTGTCAAGATCTCCACTGATGCATCCATCAAGGAGATGATTCCACCTGGTGCCCTTGTCATCCTTACACCTCTCATTGTTGGAACATTGTTTGGTGTGGAGACCCTCTCTGGTGTCCTGGCTGGTTCCCTTGTTTCTGGTGTCCAGGTAGCAATATCTGCCTCCAACACTGGTGGTGCATGGGACAATGCCAAGAAGTACATTGAGGCTGGTGCTTCGGAGCATGCAAGGACTCTTGGCCCAAAGGGGTCCGACCCACACAAGGCTGCAGTGATCGGTGACACCATTGGTGACCCACTGAAGGACACTTCAGGCCCATCACTCAACATCCTCATTAAGCTCATGGCTGTGGAGTCCCTTGTGTTTGCTCCCTTCTTTGCCACTCACGGTGGCCTGCTCTTCAAGATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

288

Amino Acids

29.5

Weight (kDa)

6.42

Isoelectric Point (pI)

16.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	1 - 273	9.5e-128	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019816)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17160 pycom12g19450 pycom17g22040
rosa_multiflora	Rmu_co7963982.1_g000001 Rmu_sc0024704.1_g000001
rosa_samantha	Rh2AG027300 Rh2AG375200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 503
AclWI	GGATC	1 cut(s)	211
AcuI	CTGAAG	2 cut(s)	747, 773
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	715, 754
AgsI	TTSAA	3 cut(s)	264, 403, 856
AjnI	CCWGG	4 cut(s)	412, 499, 570, 597
AluBI	AGCT	2 cut(s)	368, 793
AluI	AGCT	2 cut(s)	368, 793
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	74, 691, 766, 844
ApaI	GGGCCC	1 cut(s)	78
ApeKI	GCWGC	7 cut(s)	20, 158, 176, 209, 254, 365, 719
AspS9I	GGNCC	5 cut(s)	74, 75, 692, 702, 767
AsuHPI	GGTGA	2 cut(s)	743, 755
AvaII	GGWCC	1 cut(s)	702
BaeGI	GKGCMC	2 cut(s)	78, 508
BanI	GGYRCC	2 cut(s)	236, 503
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	7 cut(s)	7, 145, 163, 196, 266, 377, 706
BccI	CCATC	4 cut(s)	86, 132, 488, 778
BciT130I	CCWGG	4 cut(s)	414, 501, 572, 599
BcoDI	GTCTC	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	48, 720
BglII	AGATCT	2 cut(s)	462, 858
BisI	GCNGC	7 cut(s)	21, 159, 177, 210, 255, 366, 720
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	7 cut(s)	22, 160, 178, 211, 256, 367, 721
Bme1390I	CCNGG	4 cut(s)	414, 501, 572, 599
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	5 cut(s)	74, 75, 692, 702, 767
BmiI	GGNNCC	5 cut(s)	76, 238, 505, 580, 703
BmrFI	CCNGG	4 cut(s)	414, 501, 572, 599
BmsI	GCATC	6 cut(s)	21, 55, 136, 145, 463, 485
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BpmI	CTGGAG	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	2 cut(s)	715, 754
Bse1I	ACTGG	2 cut(s)	332, 628
Bse3DI	GCAATG	3 cut(s)	9, 42, 321
BseBI	CCWGG	4 cut(s)	414, 501, 572, 599
BseGI	GGATG	4 cut(s)	36, 476, 513, 780
BseLI	CCNNNNNNNGG	2 cut(s)	715, 754
BseMI	GCAATG	3 cut(s)	9, 42, 321
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	332, 628
BseSI	GKGCMC	2 cut(s)	78, 508
BseXI	GCAGC	7 cut(s)	7, 145, 163, 196, 266, 377, 706
BseYI	CCCAGC	1 cut(s)	161
BsgI	GTGCAG	2 cut(s)	273, 384
BshFI	GGCC	4 cut(s)	76, 693, 768, 846
BshNI	GGYRCC	2 cut(s)	236, 503
BsiHKAI	GWGCWC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	650, 793
BslI	CCNNNNNNNGG	2 cut(s)	715, 754
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	650, 793
BsnI	GGCC	4 cut(s)	76, 693, 768, 846
Bso31I	GGTCTC	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	41, 78, 508
Bsp143I	GATC	5 cut(s)	203, 303, 462, 726, 858
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	76, 693, 768, 846
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	5 cut(s)	76, 238, 505, 580, 703
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	857
BspT107I	GGYRCC	2 cut(s)	236, 503
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	9, 42, 321
BsrI	ACTGG	2 cut(s)	332, 628
BssMI	GATC	5 cut(s)	203, 303, 462, 726, 858
Bst2UI	CCWGG	4 cut(s)	414, 501, 572, 599
Bst4CI	ACNGT	2 cut(s)	268, 842
Bst6I	CTCTTC	2 cut(s)	344, 857
BstAPI	GCANNNNNTGC	3 cut(s)	20, 65, 611
BstC8I	GCNNGC	4 cut(s)	115, 395, 678, 848
BstDEI	CTNAG	1 cut(s)	35
BstEII	GGTNACC	1 cut(s)	743
BstF5I	GGATG	4 cut(s)	36, 476, 513, 780
BstKTI	GATC	5 cut(s)	206, 306, 465, 729, 861
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	5 cut(s)	203, 303, 462, 726, 858
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 65, 110, 155, 611
BstNI	CCWGG	4 cut(s)	414, 501, 572, 599
BstNSI	RCATGY	1 cut(s)	680
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	4 cut(s)	412, 499, 570, 597
BstSFI	CTRYAG	2 cut(s)	48, 720
BstSLI	GKGCMC	2 cut(s)	78, 508
BstV1I	GCAGC	7 cut(s)	7, 145, 163, 196, 266, 377, 706
BstX2I	RGATCY	3 cut(s)	203, 462, 858
BstYI	RGATCY	3 cut(s)	203, 462, 858
BsuRI	GGCC	4 cut(s)	76, 693, 768, 846
BtsCI	GGATG	4 cut(s)	36, 476, 513, 780
BtsI	GCAGTG	3 cut(s)	21, 171, 729
BtsIMutI	CAGTG	7 cut(s)	21, 88, 171, 468, 621, 729, 749
Cac8I	GCNNGC	4 cut(s)	115, 395, 678, 848
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	5 cut(s)	74, 75, 692, 702, 767
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	652
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	7 cut(s)	118, 340, 346, 421, 633, 677, 796
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	205, 305, 464, 728, 860
DpnII	GATC	5 cut(s)	203, 303, 462, 726, 858
DraIII	CACNNNGTG	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	344, 857
EarI	CTCTTC	2 cut(s)	344, 857
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	702
Eco57I	CTGAAG	2 cut(s)	747, 773
Eco91I	GGTNACC	1 cut(s)	743
EcoO65I	GGTNACC	1 cut(s)	743
EcoRII	CCWGG	4 cut(s)	412, 499, 570, 597
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	7 cut(s)	121, 343, 349, 424, 636, 680, 799
FaiI	YATR	9 cut(s)	6, 119, 341, 347, 422, 447, 634, 678, 797
FaqI	GGGAC	2 cut(s)	650, 793
FatI	CATG	7 cut(s)	117, 339, 345, 420, 632, 676, 795
Fnu4HI	GCNGC	7 cut(s)	21, 159, 177, 210, 255, 366, 720
FokI	GGATG	4 cut(s)	43, 463, 500, 767
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	21, 159, 177, 210, 255, 366, 720
GluI	GCNGC	7 cut(s)	21, 159, 177, 210, 255, 366, 720
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	76, 693, 768, 846
Hin1II	CATG	7 cut(s)	121, 343, 349, 424, 636, 680, 799
HinfI	GANTC	5 cut(s)	129, 417, 493, 685, 806
HphI	GGTGA	2 cut(s)	743, 755
Hpy188I	TCNGA	4 cut(s)	299, 372, 673, 706
Hpy188III	TCNNGA	3 cut(s)	152, 460, 856
HpyAV	CCTTC	2 cut(s)	748, 835
HpyCH4III	ACNGT	2 cut(s)	268, 842
HpyCH4V	TGCA	9 cut(s)	14, 179, 254, 314, 365, 476, 632, 680, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 65, 110, 155, 611
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	7 cut(s)	121, 343, 349, 424, 636, 680, 799
Kzo9I	GATC	5 cut(s)	203, 303, 462, 726, 858
LguI	GCTCTTC	1 cut(s)	857
LmnI	GCTCC	2 cut(s)	673, 826
Lsp1109I	GCAGC	7 cut(s)	7, 145, 163, 196, 266, 377, 706
LweI	GCATC	6 cut(s)	21, 55, 136, 145, 463, 485
MabI	ACCWGGT	1 cut(s)	499
MaeIII	GTNAC	3 cut(s)	83, 731, 743
MalI	GATC	5 cut(s)	205, 305, 464, 728, 860
MboI	GATC	5 cut(s)	203, 303, 462, 726, 858
MboII	GAAGA	3 cut(s)	361, 844, 853
MfeI	CAATTG	2 cut(s)	60, 180
MflI	RGATCY	3 cut(s)	203, 462, 858
MhlI	GDGCHC	3 cut(s)	41, 78, 508
MluCI	AATT	3 cut(s)	60, 180, 258
MlyI	GAGTC	3 cut(s)	411, 679, 815
MmeI	TCCRAC	3 cut(s)	514, 642, 729
MnlI	CCTC	8 cut(s)	89, 376, 418, 534, 569, 625, 652, 794
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	1 cut(s)	789
MslI	CAYNNNNRTG	3 cut(s)	14, 344, 800
MspR9I	CCNGG	4 cut(s)	414, 501, 572, 599
MunI	CAATTG	2 cut(s)	60, 180
MvaI	CCWGG	4 cut(s)	414, 501, 572, 599
MwoI	GCNNNNNNNGC	5 cut(s)	20, 65, 110, 155, 611
NdeII	GATC	5 cut(s)	203, 303, 462, 726, 858
NlaIII	CATG	7 cut(s)	121, 343, 349, 424, 636, 680, 799
NlaIV	GGNNCC	5 cut(s)	76, 238, 505, 580, 703
NmuCI	GTSAC	3 cut(s)	83, 731, 743
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PciSI	GCTCTTC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	129, 493
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	7 cut(s)	22, 160, 178, 211, 256, 367, 721
PleI	GAGTC	3 cut(s)	411, 679, 814
PpsI	GAGTC	3 cut(s)	411, 679, 814
Psp6I	CCWGG	4 cut(s)	412, 499, 570, 597
PspEI	GGTNACC	1 cut(s)	743
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	4 cut(s)	412, 499, 570, 597
PspN4I	GGNNCC	5 cut(s)	76, 238, 505, 580, 703
PspOMI	GGGCCC	1 cut(s)	74
PspPI	GGNCC	5 cut(s)	74, 75, 692, 702, 767
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	3 cut(s)	203, 462, 858
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	3 cut(s)	14, 344, 800
SapI	GCTCTTC	1 cut(s)	857
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	7 cut(s)	21, 159, 177, 210, 255, 366, 720
Sau3AI	GATC	5 cut(s)	203, 303, 462, 726, 858
Sau96I	GGNCC	5 cut(s)	74, 75, 692, 702, 767
SchI	GAGTC	3 cut(s)	411, 679, 815
ScrFI	CCNGG	4 cut(s)	414, 501, 572, 599
SduI	GDGCHC	3 cut(s)	41, 78, 508
SetI	ASST	8 cut(s)	100, 291, 370, 455, 502, 526, 603, 795
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	6 cut(s)	21, 55, 136, 145, 463, 485
SfcI	CTRYAG	2 cut(s)	48, 720
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	3 cut(s)	14, 344, 800
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	3 cut(s)	60, 180, 258
StyD4I	CCNGG	4 cut(s)	412, 499, 570, 597
TaaI	ACNGT	2 cut(s)	268, 842
TaqI	TCGA	1 cut(s)	127
TasI	AATT	3 cut(s)	60, 180, 258
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	2 cut(s)	129, 493
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	7 cut(s)	21, 88, 178, 475, 628, 729, 756
TseFI	GTSAC	3 cut(s)	83, 731, 743
TseI	GCWGC	7 cut(s)	20, 158, 176, 209, 254, 365, 719
Tsp45I	GTSAC	3 cut(s)	83, 731, 743
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	7 cut(s)	21, 88, 178, 475, 628, 729, 756
VpaK11BI	GGWCC	1 cut(s)	702
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.