Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024704.1

Orthogroup ID

OG0019816

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1141

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024704.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ggatttgctattggatctgctgctttggtgtctttggcactatttggtgcctttgtcagtcgtgcagcaatttcaacagttgatgtcctaaccccaaaggtctttatcggattgattgtgggtgcaatgcttccttactggttctctgccatgaccatgaagagtgtgggaagtgcagctctgaaaatggttgaggaagttcgcaggcagttcaataccatcccaggactcatggagggtcttgccaagcccgactatgctacctgtgtcaagatctccactgatgcatccatcaaggagatgattccacctggtgcccttgtcatccttacacctctcattgtcggaacattgtttggtgtggagaccctctctggtgtcctggctggttcccttgtttctggtgtccaggtagcaatatctgcctccaacactggtggtgcatgggacaatgccaagaagtacattgaggctggtgcttcggagcatgcaaggactcttggcccaaaggggtccgacccacacaaggctgcagtgatcggtgacaccataggtgacccactgaaggacacttcaggcccatcactcaacatcctcattaagctcatggctgtggagtcccttgtgtttgctcccttctttgccactcacggtggcctgctcttcaagatcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

225

Amino Acids

23.25

Weight (kDa)

8.02

Isoelectric Point (pI)

17.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019816)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17160 pycom12g19450 pycom17g22040
rosa_multiflora	Rmu_co7963982.1_g000001 Rmu_sc0024704.1_g000001
rosa_samantha	Rh2AG027300 Rh2AG375200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	47, 314
AclWI	GGATC	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	558, 584
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	526, 565
AgsI	TTSAA	3 cut(s)	75, 214, 667
AjnI	CCWGG	4 cut(s)	223, 310, 381, 408
AluBI	AGCT	2 cut(s)	179, 604
AluI	AGCT	2 cut(s)	179, 604
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	3 cut(s)	502, 577, 655
ApeKI	GCWGC	4 cut(s)	20, 65, 176, 530
AspS9I	GGNCC	3 cut(s)	503, 513, 578
AsuHPI	GGTGA	2 cut(s)	554, 566
AvaII	GGWCC	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	2 cut(s)	47, 314
BbvI	GCAGC	4 cut(s)	7, 77, 188, 517
BccI	CCATC	3 cut(s)	227, 299, 589
BciT130I	CCWGG	4 cut(s)	225, 312, 383, 410
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	531
BglII	AGATCT	2 cut(s)	273, 669
BisI	GCNGC	4 cut(s)	21, 66, 177, 531
BlsI	GCNGC	4 cut(s)	22, 67, 178, 532
Bme1390I	CCNGG	4 cut(s)	225, 312, 383, 410
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	3 cut(s)	503, 513, 578
BmiI	GGNNCC	4 cut(s)	49, 316, 391, 514
BmrFI	CCNGG	4 cut(s)	225, 312, 383, 410
BmsI	GCATC	2 cut(s)	274, 296
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 565
Bse1I	ACTGG	2 cut(s)	143, 439
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	4 cut(s)	225, 312, 383, 410
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	4 cut(s)	219, 287, 324, 591
BseLI	CCNNNNNNNGG	2 cut(s)	526, 565
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	143, 439
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	4 cut(s)	7, 77, 188, 517
BsgI	GTGCAG	2 cut(s)	84, 195
BshFI	GGCC	3 cut(s)	504, 579, 657
BshNI	GGYRCC	2 cut(s)	47, 314
BslFI	GGGAC	2 cut(s)	461, 604
BslI	CCNNNNNNNGG	2 cut(s)	526, 565
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	461, 604
BsnI	GGCC	3 cut(s)	504, 579, 657
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	14, 273, 537, 669
BspANI	GGCC	3 cut(s)	504, 579, 657
BspLI	GGNNCC	4 cut(s)	49, 316, 391, 514
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	47, 314
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	143, 439
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	14, 273, 537, 669
Bst2UI	CCWGG	4 cut(s)	225, 312, 383, 410
Bst4CI	ACNGT	2 cut(s)	79, 653
Bst6I	CTCTTC	2 cut(s)	155, 668
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	206, 489, 659
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	219, 287, 324, 591
BstKTI	GATC	4 cut(s)	17, 276, 540, 672
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	4 cut(s)	14, 273, 537, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	4 cut(s)	225, 312, 383, 410
BstNSI	RCATGY	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	4 cut(s)	223, 310, 381, 408
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	4 cut(s)	7, 77, 188, 517
BstX2I	RGATCY	3 cut(s)	14, 273, 669
BstYI	RGATCY	3 cut(s)	14, 273, 669
BsuRI	GGCC	3 cut(s)	504, 579, 657
BtsCI	GGATG	4 cut(s)	219, 287, 324, 591
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	279, 432, 540, 560
Cac8I	GCNNGC	3 cut(s)	206, 489, 659
Cfr13I	GGNCC	3 cut(s)	503, 513, 578
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	6 cut(s)	151, 157, 232, 444, 488, 607
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	4 cut(s)	16, 275, 539, 671
DpnII	GATC	4 cut(s)	14, 273, 537, 669
DraIII	CACNNNGTG	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	155, 668
EarI	CTCTTC	2 cut(s)	155, 668
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	513
Eco57I	CTGAAG	2 cut(s)	558, 584
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	4 cut(s)	223, 310, 381, 408
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	6 cut(s)	154, 160, 235, 447, 491, 610
FaiI	YATR	8 cut(s)	152, 158, 233, 258, 445, 489, 551, 608
FaqI	GGGAC	2 cut(s)	461, 604
FatI	CATG	6 cut(s)	150, 156, 231, 443, 487, 606
Fnu4HI	GCNGC	4 cut(s)	21, 66, 177, 531
FokI	GGATG	4 cut(s)	206, 274, 311, 578
Fsp4HI	GCNGC	4 cut(s)	21, 66, 177, 531
GluI	GCNGC	4 cut(s)	21, 66, 177, 531
HaeIII	GGCC	3 cut(s)	504, 579, 657
Hin1II	CATG	6 cut(s)	154, 160, 235, 447, 491, 610
HinfI	GANTC	4 cut(s)	228, 304, 496, 617
HphI	GGTGA	2 cut(s)	554, 566
Hpy188I	TCNGA	5 cut(s)	110, 183, 347, 484, 517
Hpy188III	TCNNGA	2 cut(s)	271, 667
HpyAV	CCTTC	2 cut(s)	559, 646
HpyCH4III	ACNGT	2 cut(s)	79, 653
HpyCH4V	TGCA	7 cut(s)	65, 125, 176, 287, 443, 491, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
Hsp92II	CATG	6 cut(s)	154, 160, 235, 447, 491, 610
Kzo9I	GATC	4 cut(s)	14, 273, 537, 669
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	2 cut(s)	484, 637
Lsp1109I	GCAGC	4 cut(s)	7, 77, 188, 517
LweI	GCATC	2 cut(s)	274, 296
MabI	ACCWGGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	542, 554
MalI	GATC	4 cut(s)	16, 275, 539, 671
MboI	GATC	4 cut(s)	14, 273, 537, 669
MboII	GAAGA	3 cut(s)	172, 655, 664
MflI	RGATCY	3 cut(s)	14, 273, 669
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	222, 490, 626
MmeI	TCCRAC	3 cut(s)	325, 453, 540
MnlI	CCTC	7 cut(s)	187, 229, 345, 380, 436, 463, 605
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	2 cut(s)	155, 611
MspR9I	CCNGG	4 cut(s)	225, 312, 383, 410
MvaI	CCWGG	4 cut(s)	225, 312, 383, 410
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	4 cut(s)	14, 273, 537, 669
NlaIII	CATG	6 cut(s)	154, 160, 235, 447, 491, 610
NlaIV	GGNNCC	4 cut(s)	49, 316, 391, 514
NmuCI	GTSAC	2 cut(s)	542, 554
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	4 cut(s)	22, 67, 178, 532
PleI	GAGTC	3 cut(s)	222, 490, 625
PpsI	GAGTC	3 cut(s)	222, 490, 625
Psp6I	CCWGG	4 cut(s)	223, 310, 381, 408
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	4 cut(s)	223, 310, 381, 408
PspN4I	GGNNCC	4 cut(s)	49, 316, 391, 514
PspPI	GGNCC	3 cut(s)	503, 513, 578
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	14, 273, 669
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	155, 611
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	4 cut(s)	21, 66, 177, 531
Sau3AI	GATC	4 cut(s)	14, 273, 537, 669
Sau96I	GGNCC	3 cut(s)	503, 513, 578
SchI	GAGTC	3 cut(s)	222, 490, 626
ScrFI	CCNGG	4 cut(s)	225, 312, 383, 410
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	102, 181, 266, 313, 337, 414, 556, 606
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	274, 296
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	155, 611
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	223, 310, 381, 408
TaaI	ACNGT	2 cut(s)	79, 653
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	4 cut(s)	286, 439, 540, 567
TseFI	GTSAC	2 cut(s)	542, 554
TseI	GCWGC	4 cut(s)	20, 65, 176, 530
Tsp45I	GTSAC	2 cut(s)	542, 554
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	4 cut(s)	286, 439, 540, 567
VpaK11BI	GGWCC	1 cut(s)	513
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.