Rmu_co8054258.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8054258.1
OG0011127
Physical Location & Seq
Forward (+)
1 .. 532
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8054258.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
cctctccaagacctcattgagtggcgaaaggccgtctcatcttacaaggcgctctgccgctttctgtttagtgttcagccacttatgggaatatgggttcaccagaacccggaacttgggaatgtagtctatgtcatgcctggttttgtttctgttgttgggtgccgcgtgatacctcaagagcttggccctttagggattgaagatggccctattctgtgggctcctgtatttgaaattattggtgattttgatggttcgacagcatttttcctgcatggaagggacaagggatgtaactatgtgtatcctggtttagtgaaaccggttggcaggtcatgtaatgtgttgttgcttgagattgagcctagacaaccaaaaaatgagggtgaatcgttattgcatagcaagagcttcgttcactgtccagatcaggagctgtcaaagaatatttgcgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

153

Amino Acids

17.07

Weight (kDa)

5.54

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39450
fragaria_vesca FvH4_1g24840 FvH4_1g24840 FvH4_1g24840
malus_domestica MD15G1134900.v1.1
prunus_persica Prupe.4G275200_v2.0.a1 Prupe.4G275200_v2.0.a1
pyrus_communis pycom15g12170
rosa_chinensis RchiOBHm_Chr2g0122451
rosa_laevigata RLG00000018678
rosa_multiflora Rmu_co8054258.1_g000001 Rmu_sc0003832.1_g000018
rosa_roxburghii Rroxscaffold_2G00121630
rosa_rugosa Rorug02G0238000 Rorug02G0238100
rosa_samantha Rh2AG297400 Rh2BG306200 Rh2CG284500 Rh2DG321000
rosa_wichuraiana Rw2G023660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 162
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 58, 166
AfiI CCNNNNNNNGG 3 cut(s) 86, 109, 116
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 203, 236
AjnI CCWGG 2 cut(s) 139, 310
AloI GAACNNNNNNTCC 2 cut(s) 81, 113
AluBI AGCT 3 cut(s) 184, 414, 439
AluI AGCT 3 cut(s) 184, 414, 439
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 3 cut(s) 30, 187, 208
AsiGI ACCGGT 1 cut(s) 325
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 188, 209
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 92, 257, 401
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 226
BccI CCATC 2 cut(s) 200, 248
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciT130I CCWGG 2 cut(s) 141, 312
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 324
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 2 cut(s) 58, 166
BlsI GCNGC 2 cut(s) 59, 167
Bme1390I CCNGG 3 cut(s) 110, 141, 312
BmgT120I GGNCC 2 cut(s) 188, 209
BmiI GGNNCC 2 cut(s) 164, 225
BmrFI CCNGG 3 cut(s) 110, 141, 312
BpuEI CTTGAG 2 cut(s) 162, 377
BpuMI CCSGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 109, 116
Bse118I RCCGGY 1 cut(s) 325
BseBI CCWGG 2 cut(s) 141, 312
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 3 cut(s) 86, 109, 116
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 3 cut(s) 32, 189, 210
BshNI GGYRCC 1 cut(s) 162
BshTI ACCGGT 1 cut(s) 325
BsiSI CCGG 2 cut(s) 110, 326
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 86, 109, 116
BsmAI GTCTC 1 cut(s) 40
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 3 cut(s) 32, 189, 210
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 2 cut(s) 58, 166
BspANI GGCC 3 cut(s) 32, 189, 210
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 164, 225
BspMI ACCTGC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssMI GATC 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 141, 312
Bst4CI ACNGT 1 cut(s) 425
BstF5I GGATG 1 cut(s) 299
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 430
BstNI CCWGG 2 cut(s) 141, 312
BstSCI CCNGG 3 cut(s) 108, 139, 310
BstUI CGCG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 32, 189, 210
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 188, 209
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 3 cut(s) 136, 278, 339
CviJI RGCY 9 cut(s) 32, 79, 184, 189, 210, 224, 367, 414, 439
CviKI_1 RGCY 9 cut(s) 32, 79, 184, 189, 210, 224, 367, 414, 439
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 139, 310
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 3 cut(s) 139, 281, 342
FaiI YATR 8 cut(s) 86, 94, 132, 137, 279, 303, 340, 405
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 135, 277, 338
Fnu4HI GCNGC 2 cut(s) 58, 166
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 58, 166
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 58, 166
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 3 cut(s) 32, 189, 210
HapII CCGG 2 cut(s) 110, 326
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 139, 281, 342
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 110, 326
HphI GGTGA 3 cut(s) 92, 257, 401
Hpy166II GTNNAC 2 cut(s) 100, 421
Hpy188III TCNNGA 3 cut(s) 179, 428, 434
Hpy8I GTNNAC 2 cut(s) 100, 421
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 2 cut(s) 277, 403
Hsp92II CATG 3 cut(s) 139, 281, 342
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 2 cut(s) 229, 436
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 237
MnlI CCTC 4 cut(s) 12, 23, 186, 379
MspI CCGG 2 cut(s) 110, 326
MspR9I CCNGG 3 cut(s) 110, 141, 312
MvaI CCWGG 2 cut(s) 141, 312
MvnI CGCG 1 cut(s) 168
NciI CCSGG 1 cut(s) 110
NdeII GATC 1 cut(s) 430
NlaIII CATG 3 cut(s) 139, 281, 342
NlaIV GGNNCC 2 cut(s) 164, 225
PfeI GAWTC 1 cut(s) 392
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 2 cut(s) 59, 167
Psp6I CCWGG 2 cut(s) 139, 310
PspGI CCWGG 2 cut(s) 139, 310
PspN4I GGNNCC 2 cut(s) 164, 225
PspPI GGNCC 2 cut(s) 188, 209
PstNI CAGNNNCTG 1 cut(s) 439
SatI GCNGC 2 cut(s) 58, 166
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 2 cut(s) 188, 209
ScrFI CCNGG 3 cut(s) 110, 141, 312
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 15, 178, 186, 338, 416, 441
SmlI CTYRAG 2 cut(s) 177, 356
SmoI CTYRAG 2 cut(s) 177, 356
Sse9I AATT 1 cut(s) 237
SsiI CCGC 2 cut(s) 58, 166
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 3 cut(s) 108, 139, 310
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 237
TauI GCSGC 2 cut(s) 60, 168
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 1 cut(s) 428
TspRI CASTG 1 cut(s) 428
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.