Rmu_co8092754.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8092754.1
OG0020065
Physical Location & Seq
Forward (+)
12 .. 419
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8092754.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattaccacagttggataagcgatgttgagaactacctcacttcaaatggaatattacccataatccatgtacctaacccggatcgtgtattggagtatatgtcgatcaagggtgcaagagagctatgggtagcgctagaagagcgctttggaaatgtccaagattccctcctccttgacttgaaggttcaatggaacaatctgcgctttgctgctttcaattctgttgctgaatataattcagaaactcttcgcctacagtccatgttgaggttttgtggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

111

Amino Acids

12.81

Weight (kDa)

4.72

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AfaI GTAC 1 cut(s) 123
AfeI AGCGCT 2 cut(s) 186, 197
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 4 cut(s) 96, 235, 242, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 186, 197
ApeKI GCWGC 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 187, 198, 258
AsuC2I CCSGG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 188
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 188, 199
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 321
Bsp143I GATC 2 cut(s) 133, 156
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 186
BssMI GATC 2 cut(s) 133, 156
Bst4CI ACNGT 2 cut(s) 62, 312
Bst6I CTCTTC 2 cut(s) 186, 306
BstH2I RGCGCY 2 cut(s) 188, 199
BstHHI GCGC 3 cut(s) 187, 198, 258
BstKTI GATC 2 cut(s) 136, 159
BstMBI GATC 2 cut(s) 133, 156
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 87
CfoI GCGC 3 cut(s) 187, 198, 258
Csp6I GTAC 1 cut(s) 122
CviAII CATG 3 cut(s) 31, 119, 316
CviJI RGCY 2 cut(s) 48, 175
CviKI_1 RGCY 2 cut(s) 48, 175
CviQI GTAC 1 cut(s) 122
DpnI GATC 2 cut(s) 135, 158
DpnII GATC 2 cut(s) 133, 156
Eam1104I CTCTTC 2 cut(s) 186, 306
EarI CTCTTC 2 cut(s) 186, 306
Eco47III AGCGCT 2 cut(s) 186, 197
FaeI CATG 3 cut(s) 34, 122, 319
FaiI YATR 8 cut(s) 32, 113, 120, 150, 152, 178, 288, 317
FatI CATG 3 cut(s) 30, 118, 315
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 15, 188
GlaI GCGC 3 cut(s) 186, 197, 257
GluI GCNGC 1 cut(s) 264
HaeII RGCGCY 2 cut(s) 188, 199
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 187, 198, 258
Hin1II CATG 3 cut(s) 34, 122, 319
Hin6I GCGC 3 cut(s) 185, 196, 256
HinP1I GCGC 3 cut(s) 185, 196, 256
HinfI GANTC 3 cut(s) 18, 38, 215
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 52, 295
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 62, 312
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 34, 122, 319
HspAI GCGC 3 cut(s) 185, 196, 256
Kzo9I GATC 2 cut(s) 133, 156
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 2 cut(s) 30, 144
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 2 cut(s) 15, 188
MalI GATC 2 cut(s) 135, 158
MboI GATC 2 cut(s) 133, 156
MboII GAAGA 2 cut(s) 203, 293
MluCI AATT 2 cut(s) 271, 289
MlyI GAGTC 2 cut(s) 12, 32
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 98, 230, 233, 315
MroXI GAANNNNTTC 1 cut(s) 300
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 133, 156
NlaIII CATG 3 cut(s) 34, 122, 319
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 133, 156
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 16, 90, 127, 177, 240, 326
SfcI CTRYAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 271, 289
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 188
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 62, 312
TaqI TCGA 3 cut(s) 5, 21, 155
TasI AATT 2 cut(s) 271, 289
TfiI GAWTC 1 cut(s) 215
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 15, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.