Rmu_sc0000738.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
OG0020065
Physical Location & Seq
Reverse (-)
25071 .. 25454
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000738.1_g000006.1.cds

Sequence Viewer

Length: 312 bp
atgtcgaatgaacctagatttgactttcccatgcttgactcaacagggtcggattaccacaattgggtaaccgatgttgtgaaccacctcacttcaaagggaatattacccataatccaggcacctaactcggatcttgtattgcagtatatgtcgatcaaggaagcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggctcaatggaacaatctgcgctttgctgatttcaagtttgttgctgaatataattcagaagctcttcgcctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

103

Amino Acids

11.93

Weight (kDa)

4.69

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 141
AfeI AGCGCT 2 cut(s) 186, 197
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 96, 235, 271
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 175, 299
AluI AGCT 2 cut(s) 175, 299
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 186, 197
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 187, 198, 258
BanI GGYRCC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 15, 188
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 188, 199
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 2 cut(s) 133, 156
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 2 cut(s) 186, 306
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 2 cut(s) 133, 156
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 186, 306
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 188, 199
BstHHI GCGC 3 cut(s) 187, 198, 258
BstKTI GATC 2 cut(s) 136, 159
BstMBI GATC 2 cut(s) 133, 156
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
CfoI GCGC 3 cut(s) 187, 198, 258
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 175, 239, 299
CviKI_1 RGCY 3 cut(s) 175, 239, 299
DpnI GATC 2 cut(s) 135, 158
DpnII GATC 2 cut(s) 133, 156
Eam1104I CTCTTC 2 cut(s) 186, 306
EarI CTCTTC 2 cut(s) 186, 306
Eco47III AGCGCT 2 cut(s) 186, 197
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 34
FaiI YATR 7 cut(s) 32, 113, 150, 152, 178, 288, 310
FatI CATG 1 cut(s) 30
FspBI CTAG 2 cut(s) 15, 188
GlaI GCGC 3 cut(s) 186, 197, 257
HaeII RGCGCY 2 cut(s) 188, 199
HhaI GCGC 3 cut(s) 187, 198, 258
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 3 cut(s) 185, 196, 256
HinP1I GCGC 3 cut(s) 185, 196, 256
HinfI GANTC 2 cut(s) 38, 215
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 52, 133, 295
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 3 cut(s) 185, 196, 256
Kzo9I GATC 2 cut(s) 133, 156
LguI GCTCTTC 2 cut(s) 186, 306
LpnPI CCDG 4 cut(s) 30, 104, 131, 240
MaeI CTAG 2 cut(s) 15, 188
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 158
MboI GATC 2 cut(s) 133, 156
MboII GAAGA 2 cut(s) 203, 293
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 1 cut(s) 133
MluCI AATT 2 cut(s) 61, 289
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 3 cut(s) 98, 230, 233
MroXI GAANNNNTTC 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 133, 156
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 186, 306
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 2 cut(s) 186, 306
Sau3AI GATC 2 cut(s) 133, 156
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 16, 90, 127, 177, 301
SfcI CTRYAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 61, 289
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 188
StyD4I CCNGG 1 cut(s) 117
TaqI TCGA 2 cut(s) 5, 155
TasI AATT 2 cut(s) 61, 289
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 15, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.