Rmu_sc0007857.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007857.1
OG0020065
Physical Location & Seq
Reverse (-)
10247 .. 10681
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007857.1_g000005.1.cds

Sequence Viewer

Length: 363 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattaccacagttgggtaaccaatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaacccggatcttgtattggagtatctgtcgatcaagaatgcaagagagttatgggtagcgctagaagagctttttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctacgctttactgatttcaagtctgtagctgaatataattcagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagatctaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

120

Amino Acids

13.78

Weight (kDa)

4.54

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 141
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 64, 321
AgsI TTSAA 4 cut(s) 96, 235, 242, 271
AhdI GACNNNNNGTC 1 cut(s) 338
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 3 cut(s) 196, 281, 299
AluI AGCT 3 cut(s) 196, 281, 299
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 121
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 188
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 188
BglII AGATCT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 119, 131
BmeRI GACNNNNNGTC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 119, 131
BpuMI CCSGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 321
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 64, 321
BseMI GCAATG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 64, 321
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 3 cut(s) 133, 156, 352
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 2 cut(s) 186, 306
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 3 cut(s) 133, 156, 352
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 62, 312
Bst6I CTCTTC 2 cut(s) 186, 306
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 3 cut(s) 136, 159, 355
BstMBI GATC 3 cut(s) 133, 156, 352
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstSFI CTRYAG 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 133, 352
BstYI RGATCY 2 cut(s) 133, 352
CfoI GCGC 1 cut(s) 187
CviAII CATG 2 cut(s) 31, 316
CviJI RGCY 4 cut(s) 48, 196, 281, 299
CviKI_1 RGCY 4 cut(s) 48, 196, 281, 299
DpnI GATC 3 cut(s) 135, 158, 354
DpnII GATC 3 cut(s) 133, 156, 352
DriI GACNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 186, 306
Eam1105I GACNNNNNGTC 1 cut(s) 338
EarI CTCTTC 2 cut(s) 186, 306
Eco47III AGCGCT 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 34, 319
FaiI YATR 6 cut(s) 32, 113, 178, 288, 308, 317
FatI CATG 2 cut(s) 30, 315
FspBI CTAG 2 cut(s) 15, 188
GlaI GCGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 34, 319
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 3 cut(s) 18, 38, 215
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 52, 295
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 62, 312
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 2 cut(s) 34, 319
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 3 cut(s) 133, 156, 352
LguI GCTCTTC 2 cut(s) 186, 306
LpnPI CCDG 6 cut(s) 30, 104, 131, 144, 240, 351
MaeI CTAG 2 cut(s) 15, 188
MaeIII GTNAC 2 cut(s) 67, 340
MalI GATC 3 cut(s) 135, 158, 354
MboI GATC 3 cut(s) 133, 156, 352
MboII GAAGA 2 cut(s) 203, 293
MflI RGATCY 2 cut(s) 133, 352
MluCI AATT 2 cut(s) 289, 357
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 3 cut(s) 230, 233, 315
MroXI GAANNNNTTC 1 cut(s) 300
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 131
NdeII GATC 3 cut(s) 133, 156, 352
NlaIII CATG 2 cut(s) 34, 319
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 186, 306
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 2 cut(s) 133, 352
SapI GCTCTTC 2 cut(s) 186, 306
Sau3AI GATC 3 cut(s) 133, 156, 352
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SetI ASST 8 cut(s) 16, 127, 198, 240, 283, 301, 326, 340
SfcI CTRYAG 1 cut(s) 276
Sse9I AATT 2 cut(s) 289, 357
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 188
StyD4I CCNGG 2 cut(s) 117, 129
TaaI ACNGT 2 cut(s) 62, 312
TaqI TCGA 3 cut(s) 5, 21, 155
TasI AATT 2 cut(s) 289, 357
TfiI GAWTC 1 cut(s) 215
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 15, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.