Rmu_sc0005409.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005409.1
OG0020065
Physical Location & Seq
Forward (+)
37660 .. 38028
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005409.1_g000008.1.cds

Sequence Viewer

Length: 297 bp
atgtcgaatgaacctagactcgactttcccatgcttgacccaacatgctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaactcggatcttgtattggagtatatgtcgatcaagaacgtaagagagctatgggtagcgctagaagagcgctttggaaatgtccaagattcccccctccctgacttgaaggttcaatggaacaacctgcgctttgctgatttcaagtctgttgctgaatataattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

98

Amino Acids

11.34

Weight (kDa)

4.55

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 141
AfeI AGCGCT 2 cut(s) 186, 197
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 96, 235, 242, 271
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 186, 197
AspLEI GCGC 3 cut(s) 187, 198, 258
BanI GGYRCC 1 cut(s) 121
BccI CCATC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 15, 188
BfoI RGCGCY 2 cut(s) 188, 199
BfuAI ACCTGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 2 cut(s) 133, 156
BspLI GGNNCC 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 121
BssMI GATC 2 cut(s) 133, 156
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 188, 199
BstHHI GCGC 3 cut(s) 187, 198, 258
BstKTI GATC 2 cut(s) 136, 159
BstMBI GATC 2 cut(s) 133, 156
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BveI ACCTGC 1 cut(s) 261
CfoI GCGC 3 cut(s) 187, 198, 258
CviAII CATG 2 cut(s) 31, 45
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
DpnI GATC 2 cut(s) 135, 158
DpnII GATC 2 cut(s) 133, 156
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco47III AGCGCT 2 cut(s) 186, 197
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 34, 48
FaiI YATR 8 cut(s) 32, 46, 113, 150, 152, 178, 288, 295
FatI CATG 2 cut(s) 30, 44
FspBI CTAG 2 cut(s) 15, 188
GlaI GCGC 3 cut(s) 186, 197, 257
HaeII RGCGCY 2 cut(s) 188, 199
HhaI GCGC 3 cut(s) 187, 198, 258
Hin1II CATG 2 cut(s) 34, 48
Hin6I GCGC 3 cut(s) 185, 196, 256
HinP1I GCGC 3 cut(s) 185, 196, 256
HinfI GANTC 2 cut(s) 18, 215
Hpy188I TCNGA 2 cut(s) 52, 133
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 34, 48
HspAI GCGC 3 cut(s) 185, 196, 256
Kzo9I GATC 2 cut(s) 133, 156
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 104, 131, 240, 266
MaeI CTAG 2 cut(s) 15, 188
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 158
MboI GATC 2 cut(s) 133, 156
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 133, 156
NlaIII CATG 2 cut(s) 34, 48
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 133, 156
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 119
SetI ASST 6 cut(s) 16, 127, 168, 177, 240, 255
Sse9I AATT 1 cut(s) 289
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 188
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 5, 21, 155
TasI AATT 1 cut(s) 289
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 24, 282
XceI RCATGY 1 cut(s) 48
XspI CTAG 2 cut(s) 15, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.