Rmu_co8113448.1_g000001

Rhodanese-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8113448.1
OG0011060
Physical Location & Seq
Reverse (-)
1 .. 512
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8113448.1_g000001.1.cds

Sequence Viewer

Length: 317 bp
atgtgttggactcaggaactggttactctcagctgtaatcctctgataaaatcgccggagatttcacatgctggaaagcatctttccgcagctgagtttcattccgttttacagaaagctgggcaattagacaaagagggcaaagaacacaatagagaacttgttctattggatgcaaggaatctatatgaaacaagaattgggaagttccaccccccaaatgtggaaactttggaccccggcattaggcagtacagtgatcttccctcatggatagatgataactctgatcaattgcaaggaaaatcagttcttat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FSH1 Rhodanese_C

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

5.65

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 223, 246
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AloI GAACNNNNNNTCC 1 cut(s) 294
AluBI AGCT 3 cut(s) 33, 92, 119
AluI AGCT 3 cut(s) 33, 92, 119
AlwNI CAGNNNCTG 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 1 cut(s) 240
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 88, 163
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 246
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 223, 246
BseMII CTCAG 3 cut(s) 26, 43, 84
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 56, 240
BslI CCNNNNNNNGG 2 cut(s) 223, 246
Bsp143I GATC 2 cut(s) 259, 289
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 3 cut(s) 25, 42, 85
BspLI GGNNCC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 259, 289
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 3 cut(s) 12, 29, 93
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 262, 292
BstMBI GATC 2 cut(s) 259, 289
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 68, 270
CviJI RGCY 3 cut(s) 33, 92, 119
CviKI_1 RGCY 3 cut(s) 33, 92, 119
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 12, 29, 93
DpnI GATC 2 cut(s) 261, 291
DpnII GATC 2 cut(s) 259, 289
Eco47I GGWCC 1 cut(s) 235
FaeI CATG 2 cut(s) 71, 273
FaiI YATR 4 cut(s) 69, 187, 189, 271
FatI CATG 2 cut(s) 67, 269
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 123
HapII CCGG 2 cut(s) 56, 240
Hin1II CATG 2 cut(s) 71, 273
HinfI GANTC 2 cut(s) 10, 181
HpaII CCGG 2 cut(s) 56, 240
Hpy188I TCNGA 2 cut(s) 45, 289
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 176, 298
HpyF3I CTNAG 3 cut(s) 12, 29, 93
Hsp92II CATG 2 cut(s) 71, 273
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 259, 289
LpnPI CCDG 5 cut(s) 5, 57, 69, 105, 253
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 88, 163
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 261, 291
MboI GATC 2 cut(s) 259, 289
MboII GAAGA 1 cut(s) 254
MfeI CAATTG 1 cut(s) 293
MluCI AATT 3 cut(s) 125, 198, 293
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 3 cut(s) 51, 130, 277
MroXI GAANNNNTTC 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 33, 92
MspI CCGG 2 cut(s) 56, 240
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 293
NciI CCSGG 1 cut(s) 240
NdeII GATC 2 cut(s) 259, 289
NlaIII CATG 2 cut(s) 71, 273
NlaIV GGNNCC 1 cut(s) 237
NspI RCATGY 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 33, 92
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 259, 289
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 240
SetI ASST 3 cut(s) 35, 94, 121
SfaNI GCATC 2 cut(s) 88, 163
SinI GGWCC 1 cut(s) 235
Sse9I AATT 3 cut(s) 125, 198, 293
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 257
TasI AATT 3 cut(s) 125, 198, 293
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 89, 204
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.