Rhodanese-like domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09280 |
| fragaria_vesca | FvH4_6g07770 FvH4_6g07770 FvH4_6g07770 |
| malus_domestica | MD04G1192000.v1.1 |
| prunus_persica | Prupe.6G310600_v2.0.a1 Prupe.6G310600_v2.0.a1 |
| pyrus_communis | pycom04g16950 |
| rosa_chinensis | RchiOBHm_Chr3g0457491 |
| rosa_laevigata | RLG00000025219 |
| rosa_multiflora | Rmu_co8113448.1_g000001 Rmu_co8194280.1_g000001 Rmu_sc0007404.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00421830 |
| rosa_rugosa | Rorug03G0020500 |
| rosa_samantha | Rh3AG081200 Rh3BG083300 Rh3CG083500 Rh3DG084700 |
| rosa_wichuraiana | Rw3G006960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 839, 857, 1075 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 764 |
| AccII | CGCG | 3 cut(s) | 141, 1346, 1592 |
| AciI | CCGC | 8 cut(s) | 139, 215, 325, 408, 1014, 1590, 1592, 1870 |
| AclWI | GGATC | 3 cut(s) | 12, 1412, 1725 |
| AcoI | YGGCCR | 3 cut(s) | 136, 268, 1179 |
| AcsI | RAATTY | 1 cut(s) | 72 |
| AcuI | CTGAAG | 1 cut(s) | 1035 |
| AcyI | GRCGYC | 2 cut(s) | 162, 1076 |
| AfaI | GTAC | 3 cut(s) | 65, 575, 1430 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 544, 684, 764, 940, 1505 |
| AflIII | ACRYGT | 2 cut(s) | 711, 1344 |
| AgsI | TTSAA | 7 cut(s) | 199, 239, 253, 280, 1007, 1040, 1159 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 877 |
| AjiI | CACGTC | 1 cut(s) | 884 |
| AjnI | CCWGG | 1 cut(s) | 559 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 30, 62, 504, 536 |
| AleI | CACNNNNGTG | 2 cut(s) | 984, 1284 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 290, 322, 615, 647 |
| Alw21I | GWGCWC | 3 cut(s) | 1209, 1329, 1625 |
| Alw26I | GTCTC | 2 cut(s) | 152, 1051 |
| AlwI | GGATC | 3 cut(s) | 12, 1412, 1725 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1547 |
| Ama87I | CYCGRG | 1 cut(s) | 1150 |
| AoxI | GGCC | 5 cut(s) | 136, 268, 1097, 1179, 1495 |
| ApaI | GGGCCC | 1 cut(s) | 1499 |
| ApeKI | GCWGC | 7 cut(s) | 212, 260, 410, 1435, 1532, 1541, 1544 |
| ApoI | RAATTY | 1 cut(s) | 72 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 753, 1021 |
| AspLEI | GCGC | 1 cut(s) | 1078 |
| AspS9I | GGNCC | 6 cut(s) | 556, 1097, 1301, 1409, 1495, 1496 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 791, 1732 |
| AsuII | TTCGAA | 1 cut(s) | 1452 |
| AvaI | CYCGRG | 1 cut(s) | 1150 |
| AvaII | GGWCC | 3 cut(s) | 556, 1301, 1409 |
| BaeGI | GKGCMC | 1 cut(s) | 1499 |
| BalI | TGGCCA | 1 cut(s) | 1181 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 3 cut(s) | 839, 857, 1075 |
| BanII | GRGCYC | 3 cut(s) | 947, 1209, 1499 |
| BauI | CACGAG | 1 cut(s) | 1208 |
| BbsI | GAAGAC | 3 cut(s) | 839, 878, 990 |
| Bbv12I | GWGCWC | 3 cut(s) | 1209, 1329, 1625 |
| BbvI | GCAGC | 7 cut(s) | 199, 272, 422, 1447, 1531, 1544, 1553 |
| BccI | CCATC | 4 cut(s) | 755, 1039, 1400, 1588 |
| BceAI | ACGGC | 1 cut(s) | 1738 |
| BciT130I | CCWGG | 1 cut(s) | 561 |
| BclI | TGATCA | 3 cut(s) | 796, 1674, 1846 |
| BcoDI | GTCTC | 2 cut(s) | 152, 1051 |
| BfaI | CTAG | 1 cut(s) | 911 |
| BfmI | CTRYAG | 5 cut(s) | 901, 1424, 1443, 1548, 1646 |
| BfoI | RGCGCY | 1 cut(s) | 1079 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1178 |
| BisI | GCNGC | 8 cut(s) | 139, 213, 261, 411, 1436, 1533, 1542, 1545 |
| BlpI | GCTNAGC | 1 cut(s) | 1203 |
| BlsI | GCNGC | 8 cut(s) | 140, 214, 262, 412, 1437, 1534, 1543, 1546 |
| Bme1390I | CCNGG | 1 cut(s) | 561 |
| Bme18I | GGWCC | 3 cut(s) | 556, 1301, 1409 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 877 |
| BmeT110I | CYCGRG | 1 cut(s) | 1150 |
| BmgBI | CACGTC | 1 cut(s) | 884 |
| BmgT120I | GGNCC | 6 cut(s) | 556, 1097, 1301, 1409, 1495, 1496 |
| BmiI | GGNNCC | 6 cut(s) | 6, 558, 841, 859, 1077, 1497 |
| BmrFI | CCNGG | 1 cut(s) | 561 |
| BmrI | ACTGGG | 2 cut(s) | 1104, 1402 |
| BmsI | GCATC | 6 cut(s) | 409, 484, 680, 814, 1210, 1644 |
| BmuI | ACTGGG | 2 cut(s) | 1104, 1402 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1812 |
| BpiI | GAAGAC | 3 cut(s) | 839, 878, 990 |
| BpmI | CTGGAG | 1 cut(s) | 669 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1203 |
| Bpu14I | TTCGAA | 1 cut(s) | 1452 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| BsaHI | GRCGYC | 2 cut(s) | 162, 1076 |
| BsaJI | CCNNGG | 7 cut(s) | 133, 294, 559, 1257, 1320, 1590, 1791 |
| BsaWI | WCCGGW | 2 cut(s) | 801, 1811 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1084, 1114, 1772, 1802, 1850, 1880 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 544, 684, 764, 940, 1505 |
| Bse1I | ACTGG | 5 cut(s) | 345, 652, 1099, 1239, 1397 |
| Bse3DI | GCAATG | 4 cut(s) | 207, 1197, 1542, 1687 |
| BseBI | CCWGG | 1 cut(s) | 561 |
| BseDI | CCNNGG | 7 cut(s) | 133, 294, 559, 1257, 1320, 1590, 1791 |
| BseGI | GGATG | 4 cut(s) | 499, 1225, 1821, 1834 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 544, 684, 764, 940, 1505 |
| BseMI | GCAATG | 4 cut(s) | 207, 1197, 1542, 1687 |
| BseMII | CTCAG | 3 cut(s) | 364, 405, 1194 |
| BseNI | ACTGG | 5 cut(s) | 345, 652, 1099, 1239, 1397 |
| BseRI | GAGGAG | 5 cut(s) | 122, 144, 1296, 1299, 1679 |
| BseSI | GKGCMC | 1 cut(s) | 1499 |
| BseX3I | CGGCCG | 1 cut(s) | 136 |
| BseXI | GCAGC | 7 cut(s) | 199, 272, 422, 1447, 1531, 1544, 1553 |
| BseYI | CCCAGC | 3 cut(s) | 440, 698, 1513 |
| Bsh1236I | CGCG | 3 cut(s) | 141, 1346, 1592 |
| Bsh1285I | CGRYCG | 2 cut(s) | 139, 275 |
| BshFI | GGCC | 5 cut(s) | 138, 270, 1099, 1181, 1497 |
| BshNI | GGYRCC | 3 cut(s) | 839, 857, 1075 |
| BsiEI | CGRYCG | 2 cut(s) | 139, 275 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1209, 1329, 1625 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1150 |
| BsiSI | CCGG | 3 cut(s) | 377, 802, 1812 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 544, 684, 764, 940, 1505 |
| BsmAI | GTCTC | 2 cut(s) | 152, 1051 |
| BsmBI | CGTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsmI | GAATGC | 3 cut(s) | 912, 1150, 1238 |
| BsnI | GGCC | 5 cut(s) | 138, 270, 1099, 1181, 1497 |
| BsoBI | CYCGRG | 1 cut(s) | 1150 |
| Bsp119I | TTCGAA | 1 cut(s) | 1452 |
| Bsp120I | GGGCCC | 1 cut(s) | 1495 |
| Bsp1286I | GDGCHC | 5 cut(s) | 947, 1209, 1329, 1499, 1625 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1203 |
| BspACI | CCGC | 8 cut(s) | 139, 215, 325, 408, 1014, 1590, 1592, 1870 |
| BspANI | GGCC | 5 cut(s) | 138, 270, 1099, 1181, 1497 |
| BspCNI | CTCAG | 3 cut(s) | 363, 406, 1195 |
| BspFNI | CGCG | 3 cut(s) | 141, 1346, 1592 |
| BspHI | TCATGA | 1 cut(s) | 1228 |
| BspLI | GGNNCC | 6 cut(s) | 6, 558, 841, 859, 1077, 1497 |
| BspMAI | CTGCAG | 3 cut(s) | 905, 1428, 1447 |
| BspPI | GGATC | 3 cut(s) | 12, 1412, 1725 |
| BspT104I | TTCGAA | 1 cut(s) | 1452 |
| BspT107I | GGYRCC | 3 cut(s) | 839, 857, 1075 |
| BsrDI | GCAATG | 4 cut(s) | 207, 1197, 1542, 1687 |
| BsrI | ACTGG | 5 cut(s) | 345, 652, 1099, 1239, 1397 |
| BssECI | CCNNGG | 7 cut(s) | 133, 294, 559, 1257, 1320, 1590, 1791 |
| BssNI | GRCGYC | 2 cut(s) | 162, 1076 |
| BssSI | CACGAG | 1 cut(s) | 1208 |
| Bst2BI | CACGAG | 1 cut(s) | 1208 |
| Bst2UI | CCWGG | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 8 cut(s) | 175, 276, 578, 753, 1045, 1480, 1784, 1795 |
| Bst6I | CTCTTC | 2 cut(s) | 98, 1054 |
| BstACI | GRCGYC | 2 cut(s) | 162, 1076 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 900 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstBI | TTCGAA | 1 cut(s) | 1452 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDEI | CTNAG | 6 cut(s) | 350, 414, 916, 1059, 1203, 1265 |
| BstDSI | CCRYGG | 2 cut(s) | 1590, 1791 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 682 |
| BstF5I | GGATG | 4 cut(s) | 499, 1225, 1821, 1834 |
| BstFNI | CGCG | 3 cut(s) | 141, 1346, 1592 |
| BstH2I | RGCGCY | 1 cut(s) | 1079 |
| BstHHI | GCGC | 1 cut(s) | 1078 |
| BstMAI | GTCTC | 2 cut(s) | 152, 1051 |
| BstMCI | CGRYCG | 2 cut(s) | 139, 275 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 900, 1178, 1432, 1538, 1541, 1550 |
| BstNI | CCWGG | 1 cut(s) | 561 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1812 |
| BstSCI | CCNGG | 1 cut(s) | 559 |
| BstSFI | CTRYAG | 5 cut(s) | 901, 1424, 1443, 1548, 1646 |
| BstSLI | GKGCMC | 1 cut(s) | 1499 |
| BstUI | CGCG | 3 cut(s) | 141, 1346, 1592 |
| BstV1I | GCAGC | 7 cut(s) | 199, 272, 422, 1447, 1531, 1544, 1553 |
| BstV2I | GAAGAC | 3 cut(s) | 839, 878, 990 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BstZI | CGGCCG | 1 cut(s) | 136 |
| BsuRI | GGCC | 5 cut(s) | 138, 270, 1099, 1181, 1497 |
| BtgI | CCRYGG | 2 cut(s) | 1590, 1791 |
| BtrI | CACGTC | 1 cut(s) | 884 |
| BtsCI | GGATG | 4 cut(s) | 499, 1225, 1821, 1834 |
| BtsI | GCAGTG | 1 cut(s) | 1327 |
| BtsIMutI | CAGTG | 3 cut(s) | 583, 645, 1327 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1547 |
| CciI | TCATGA | 1 cut(s) | 1228 |
| CfoI | GCGC | 1 cut(s) | 1078 |
| Cfr13I | GGNCC | 6 cut(s) | 556, 1097, 1301, 1409, 1495, 1496 |
| Cfr42I | CCGCGG | 1 cut(s) | 1593 |
| CseI | GACGC | 1 cut(s) | 151 |
| Csp6I | GTAC | 3 cut(s) | 64, 574, 1429 |
| CviAII | CATG | 6 cut(s) | 389, 591, 1068, 1130, 1229, 1661 |
| CviQI | GTAC | 3 cut(s) | 64, 574, 1429 |
| DdeI | CTNAG | 6 cut(s) | 350, 414, 916, 1059, 1203, 1265 |
| DinI | GGCGCC | 1 cut(s) | 1077 |
| DriI | GACNNNNNGTC | 1 cut(s) | 877 |
| EaeI | YGGCCR | 3 cut(s) | 136, 268, 1179 |
| EagI | CGGCCG | 1 cut(s) | 136 |
| Eam1104I | CTCTTC | 2 cut(s) | 98, 1054 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 877 |
| EarI | CTCTTC | 2 cut(s) | 98, 1054 |
| EciI | GGCGGA | 1 cut(s) | 1029 |
| Ecl136II | GAGCTC | 1 cut(s) | 1207 |
| EclXI | CGGCCG | 1 cut(s) | 136 |
| Eco24I | GRGCYC | 3 cut(s) | 947, 1209, 1499 |
| Eco47I | GGWCC | 3 cut(s) | 556, 1301, 1409 |
| Eco52I | CGGCCG | 1 cut(s) | 136 |
| Eco53kI | GAGCTC | 1 cut(s) | 1207 |
| Eco57I | CTGAAG | 1 cut(s) | 1035 |
| Eco88I | CYCGRG | 1 cut(s) | 1150 |
| EcoICRI | GAGCTC | 1 cut(s) | 1207 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 682 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1301, 1495 |
| EcoRII | CCWGG | 1 cut(s) | 559 |
| EcoT38I | GRGCYC | 3 cut(s) | 947, 1209, 1499 |
| EgeI | GGCGCC | 1 cut(s) | 1077 |
| EheI | GGCGCC | 1 cut(s) | 1077 |
| Esp3I | CGTCTC | 1 cut(s) | 152 |
| FaeI | CATG | 6 cut(s) | 392, 594, 1071, 1133, 1232, 1664 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 6 cut(s) | 388, 590, 1067, 1129, 1228, 1660 |
| FauI | CCCGC | 1 cut(s) | 1877 |
| FbaI | TGATCA | 3 cut(s) | 796, 1674, 1846 |
| Fnu4HI | GCNGC | 8 cut(s) | 139, 213, 261, 411, 1436, 1533, 1542, 1545 |
| FokI | GGATG | 4 cut(s) | 506, 1232, 1808, 1821 |
| FriOI | GRGCYC | 3 cut(s) | 947, 1209, 1499 |
| Fsp4HI | GCNGC | 8 cut(s) | 139, 213, 261, 411, 1436, 1533, 1542, 1545 |
| FspBI | CTAG | 1 cut(s) | 911 |
| GlaI | GCGC | 1 cut(s) | 1077 |
| GluI | GCNGC | 8 cut(s) | 139, 213, 261, 411, 1436, 1533, 1542, 1545 |
| GsaI | CCCAGC | 3 cut(s) | 444, 702, 1517 |
| GsuI | CTGGAG | 1 cut(s) | 669 |
| HaeII | RGCGCY | 1 cut(s) | 1079 |
| HaeIII | GGCC | 5 cut(s) | 138, 270, 1099, 1181, 1497 |
| HapII | CCGG | 3 cut(s) | 377, 802, 1812 |
| HgaI | GACGC | 1 cut(s) | 151 |
| HhaI | GCGC | 1 cut(s) | 1078 |
| Hin1I | GRCGYC | 2 cut(s) | 162, 1076 |
| Hin1II | CATG | 6 cut(s) | 392, 594, 1071, 1133, 1232, 1664 |
| Hin6I | GCGC | 1 cut(s) | 1076 |
| HinP1I | GCGC | 1 cut(s) | 1076 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HindIII | AAGCTT | 1 cut(s) | 254 |
| HinfI | GANTC | 7 cut(s) | 107, 654, 973, 1017, 1116, 1457, 1808 |
| HpaII | CCGG | 3 cut(s) | 377, 802, 1812 |
| HphI | GGTGA | 3 cut(s) | 163, 791, 1732 |
| Hpy166II | GTNNAC | 4 cut(s) | 66, 166, 309, 1025 |
| Hpy188I | TCNGA | 8 cut(s) | 366, 610, 776, 823, 1054, 1143, 1324, 1851 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 758, 1229, 1678 |
| Hpy8I | GTNNAC | 4 cut(s) | 66, 166, 309, 1025 |
| Hpy99I | CGWCG | 3 cut(s) | 89, 1781, 1784 |
| HpyAV | CCTTC | 3 cut(s) | 233, 934, 1704 |
| HpyCH4III | ACNGT | 8 cut(s) | 175, 276, 578, 753, 1045, 1480, 1784, 1795 |
| HpyCH4IV | ACGT | 4 cut(s) | 168, 190, 711, 883 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 900, 1178, 1432, 1538, 1541, 1550 |
| HpyF3I | CTNAG | 6 cut(s) | 350, 414, 916, 1059, 1203, 1265 |
| HpySE526I | ACGT | 4 cut(s) | 168, 190, 711, 883 |
| Hsp92I | GRCGYC | 2 cut(s) | 162, 1076 |
| Hsp92II | CATG | 6 cut(s) | 392, 594, 1071, 1133, 1232, 1664 |
| HspAI | GCGC | 1 cut(s) | 1076 |
| KasI | GGCGCC | 1 cut(s) | 1075 |
| Ksp22I | TGATCA | 3 cut(s) | 796, 1674, 1846 |
| KspI | CCGCGG | 1 cut(s) | 1593 |
| LmnI | GCTCC | 3 cut(s) | 1324, 1529, 1793 |
| Lsp1109I | GCAGC | 7 cut(s) | 199, 272, 422, 1447, 1531, 1544, 1553 |
| LweI | GCATC | 6 cut(s) | 409, 484, 680, 814, 1210, 1644 |
| MaeI | CTAG | 1 cut(s) | 911 |
| MaeII | ACGT | 4 cut(s) | 168, 190, 711, 883 |
| MaeIII | GTNAC | 7 cut(s) | 169, 186, 343, 879, 1388, 1641, 1814 |
| MfeI | CAATTG | 2 cut(s) | 614, 1282 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 5 cut(s) | 947, 1209, 1329, 1499, 1625 |
| MlsI | TGGCCA | 1 cut(s) | 1181 |
| MluCI | AATT | 6 cut(s) | 72, 446, 519, 614, 1109, 1282 |
| MluI | ACGCGT | 1 cut(s) | 1344 |
| MluNI | TGGCCA | 1 cut(s) | 1181 |
| Mly113I | GGCGCC | 1 cut(s) | 1076 |
| MlyI | GAGTC | 2 cut(s) | 101, 1802 |
| MmeI | TCCRAC | 1 cut(s) | 135 |
| Mox20I | TGGCCA | 1 cut(s) | 1181 |
| MroXI | GAANNNNTTC | 2 cut(s) | 753, 1021 |
| MscI | TGGCCA | 1 cut(s) | 1181 |
| MseI | TTAA | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 2 cut(s) | 984, 1284 |
| Msp20I | TGGCCA | 1 cut(s) | 1181 |
| MspA1I | CMGCKG | 4 cut(s) | 354, 413, 1544, 1592 |
| MspI | CCGG | 3 cut(s) | 377, 802, 1812 |
| MspR9I | CCNGG | 1 cut(s) | 561 |
| MunI | CAATTG | 2 cut(s) | 614, 1282 |
| Mva1269I | GAATGC | 3 cut(s) | 912, 1150, 1238 |
| MvaI | CCWGG | 1 cut(s) | 561 |
| MvnI | CGCG | 3 cut(s) | 141, 1346, 1592 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 900, 1178, 1432, 1538, 1541, 1550 |
| NarI | GGCGCC | 1 cut(s) | 1076 |
| NlaIII | CATG | 6 cut(s) | 392, 594, 1071, 1133, 1232, 1664 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 558, 841, 859, 1077, 1497 |
| NmeAIII | GCCGAG | 5 cut(s) | 114, 138, 319, 1238, 1781 |
| NmuCI | GTSAC | 3 cut(s) | 169, 879, 1814 |
| NspI | RCATGY | 1 cut(s) | 392 |
| NspV | TTCGAA | 1 cut(s) | 1452 |
| OliI | CACNNNNGTG | 2 cut(s) | 984, 1284 |
| PaeR7I | CTCGAG | 1 cut(s) | 1150 |
| PagI | TCATGA | 1 cut(s) | 1228 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 165 |
| PctI | GAATGC | 3 cut(s) | 912, 1150, 1238 |
| PdmI | GAANNNNTTC | 2 cut(s) | 753, 1021 |
| PfeI | GAWTC | 5 cut(s) | 654, 973, 1017, 1116, 1457 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 764 |
| PkrI | GCNGC | 8 cut(s) | 140, 214, 262, 412, 1437, 1534, 1543, 1546 |
| PleI | GAGTC | 2 cut(s) | 101, 1802 |
| PluTI | GGCGCC | 1 cut(s) | 1079 |
| PpsI | GAGTC | 2 cut(s) | 101, 1802 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PpuMI | RGGWCCY | 1 cut(s) | 1301 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1812 |
| Psp124BI | GAGCTC | 1 cut(s) | 1209 |
| Psp5II | RGGWCCY | 1 cut(s) | 1301 |
| Psp6I | CCWGG | 1 cut(s) | 559 |
| PspFI | CCCAGC | 3 cut(s) | 440, 698, 1513 |
| PspGI | CCWGG | 1 cut(s) | 559 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 558, 841, 859, 1077, 1497 |
| PspOMI | GGGCCC | 1 cut(s) | 1495 |
| PspPI | GGNCC | 6 cut(s) | 556, 1097, 1301, 1409, 1495, 1496 |
| PspPPI | RGGWCCY | 1 cut(s) | 1301 |
| PspXI | VCTCGAGB | 1 cut(s) | 1150 |
| PstI | CTGCAG | 3 cut(s) | 905, 1428, 1447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1547 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| PvuII | CAGCTG | 3 cut(s) | 354, 413, 1544 |
| RsaI | GTAC | 3 cut(s) | 65, 575, 1430 |
| RsaNI | GTAC | 3 cut(s) | 64, 574, 1429 |
| RseI | CAYNNNNRTG | 2 cut(s) | 984, 1284 |
| SacI | GAGCTC | 1 cut(s) | 1209 |
| SacII | CCGCGG | 1 cut(s) | 1593 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 8 cut(s) | 139, 213, 261, 411, 1436, 1533, 1542, 1545 |
| Sau96I | GGNCC | 6 cut(s) | 556, 1097, 1301, 1409, 1495, 1496 |
| SchI | GAGTC | 2 cut(s) | 101, 1802 |
| ScrFI | CCNGG | 1 cut(s) | 561 |
| SduI | GDGCHC | 5 cut(s) | 947, 1209, 1329, 1499, 1625 |
| SfaNI | GCATC | 6 cut(s) | 409, 484, 680, 814, 1210, 1644 |
| SfcI | CTRYAG | 5 cut(s) | 901, 1424, 1443, 1548, 1646 |
| SfoI | GGCGCC | 1 cut(s) | 1077 |
| Sfr274I | CTCGAG | 1 cut(s) | 1150 |
| Sfr303I | CCGCGG | 1 cut(s) | 1593 |
| SfuI | TTCGAA | 1 cut(s) | 1452 |
| SgrBI | CCGCGG | 1 cut(s) | 1593 |
| SinI | GGWCC | 3 cut(s) | 556, 1301, 1409 |
| SlaI | CTCGAG | 1 cut(s) | 1150 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 984, 1284 |
| SmlI | CTYRAG | 1 cut(s) | 1150 |
| SmoI | CTYRAG | 1 cut(s) | 1150 |
| Sse9I | AATT | 6 cut(s) | 72, 446, 519, 614, 1109, 1282 |
| SsiI | CCGC | 8 cut(s) | 139, 215, 325, 408, 1014, 1590, 1592, 1870 |
| SspDI | GGCGCC | 1 cut(s) | 1075 |
| SspI | AATATT | 2 cut(s) | 13, 832 |
| SspMI | CTAG | 1 cut(s) | 911 |
| SstI | GAGCTC | 1 cut(s) | 1209 |
| StyD4I | CCNGG | 1 cut(s) | 559 |
| TaaI | ACNGT | 8 cut(s) | 175, 276, 578, 753, 1045, 1480, 1784, 1795 |
| TaiI | ACGT | 4 cut(s) | 171, 193, 714, 886 |
| TaqI | TCGA | 7 cut(s) | 84, 224, 1151, 1416, 1452, 1776, 1800 |
| TaqII | GACCGA | 1 cut(s) | 1746 |
| TasI | AATT | 6 cut(s) | 72, 446, 519, 614, 1109, 1282 |
| TatI | WGTACW | 2 cut(s) | 63, 573 |
| TauI | GCSGC | 1 cut(s) | 141 |
| TfiI | GAWTC | 5 cut(s) | 654, 973, 1017, 1116, 1457 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TscAI | CASTG | 3 cut(s) | 583, 652, 1334 |
| TseFI | GTSAC | 3 cut(s) | 169, 879, 1814 |
| TseI | GCWGC | 7 cut(s) | 212, 260, 410, 1435, 1532, 1541, 1544 |
| Tsp45I | GTSAC | 3 cut(s) | 169, 879, 1814 |
| TspDTI | ATGAA | 4 cut(s) | 410, 525, 1231, 1245 |
| TspGWI | ACGGA | 2 cut(s) | 415, 1521 |
| TspRI | CASTG | 3 cut(s) | 583, 652, 1334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 3 cut(s) | 556, 1301, 1409 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 682 |
| XapI | RAATTY | 1 cut(s) | 72 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XhoI | CTCGAG | 1 cut(s) | 1150 |
| XmnI | GAANNNNTTC | 2 cut(s) | 753, 1021 |
| XspI | CTAG | 1 cut(s) | 911 |