Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007404.1

Orthogroup ID

OG0011060

Physical Location & Seq

Genomic Coordinates Reverse (-)

65625 .. 68782

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007404.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggatcccaatattaacagccaagaagaacaagaagatgatgaccaatatggggttcttttatactacaagtacacccaaattccagacctcgacgacctcttccacttctacgactccaactgcaactctctctcactcctcggccgcgttcgtctctctcctctcggcgtcaacgtcaccgttggtggcaagttacgtgcattgaacaagcacattgctgcggttgagtcgaatagtttgtttgacgggactgacttcaagcttgcagcttgtggccgaccgtcgaatgataaggttgccgaggaatgtgggttcacttctctctcaatccgcattgtcaaggtgattgccagcttttcggaattggttactcttagctgtaatcctctgataaaatcgccggagatttcacatgctggaaagcatctttccgcagctgagtttcattccgttttacagaaagctgggcaattagacaaagagggcaaagaacacaatagagaacttgttctattggatgcaaggaatctatatgaaacaagaattgggaagttccaccccccaaatgtggaaactttggaccccggcattaggcagtacagtgatcttccctcatggatagatgataactctgatcaattgcaaggaaaatcagttcttatgtattgcactggaggaatcaggtgtgaaatggcatcagcctatattaggtcaaaaggtgctgggtttgagaacgtgtttcagttatatggtggaatacagcgttatttggaacagtttccagatggtggttttttcagagggaagaacttttaccagcagcaaactgcagggttcgaagaatcattagcgtatatcaaaaccgtgtttgcacaggagggcccacttgacggagtgctgggattttcacagggagcagcaatggcagctgctgtagcttttgcccaaccaacacaaactacaccatcaaaaaccgcggacatgcagtttaggtttgtgattttgtgctctggcttcggcatcaagttactagagcaagagttccatgaggagagaatgatcaagaaatgccattgcccttccctccacatattcggcaaggatcacggcaaagaccgacagatcgccacgcaagaaagccgagaactcgcttccttattcgacgacggttgctccacggtcatcgaacacgactccggccacatcatccccactcgtcatccctacattgatcaaatcaaagacttcctctcccgcttcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1 Rhodanese_C

Protein Analysis

422

Amino Acids

47.09

Weight (kDa)

5.55

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09280
fragaria_vesca	FvH4_6g07770 FvH4_6g07770 FvH4_6g07770
malus_domestica	MD04G1192000.v1.1
prunus_persica	Prupe.6G310600_v2.0.a1 Prupe.6G310600_v2.0.a1
pyrus_communis	pycom04g16950
rosa_chinensis	RchiOBHm_Chr3g0457491
rosa_laevigata	RLG00000025219
rosa_multiflora	Rmu_co8113448.1_g000001 Rmu_co8194280.1_g000001 Rmu_sc0007404.1_g000017
rosa_roxburghii	Rroxscaffold_6G00421830
rosa_rugosa	Rorug03G0020500
rosa_samantha	Rh3AG081200 Rh3BG083300 Rh3CG083500 Rh3DG084700
rosa_wichuraiana	Rw3G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccII	CGCG	2 cut(s)	150, 980
AciI	CCGC	7 cut(s)	148, 224, 334, 435, 978, 980, 1258
AclWI	GGATC	2 cut(s)	12, 1113
AcoI	YGGCCR	3 cut(s)	145, 277, 1201
AcsI	RAATTY	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	74, 602
AfiI	CCNNNNNNNGG	6 cut(s)	52, 571, 594, 711, 791, 893
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	208, 262
AjuI	GAANNNNNNNTTGG	4 cut(s)	39, 71, 531, 563
AloI	GAACNNNNNNTCC	4 cut(s)	299, 331, 642, 674
AluBI	AGCT	8 cut(s)	265, 272, 357, 381, 440, 467, 932, 941
AluI	AGCT	8 cut(s)	265, 272, 357, 381, 440, 467, 932, 941
Alw21I	GWGCWC	1 cut(s)	1013
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	12, 1113
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	145, 277, 883, 1201
ApaI	GGGCCC	1 cut(s)	887
ApeKI	GCWGC	7 cut(s)	221, 269, 437, 823, 920, 929, 932
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	2 cut(s)	510, 780
AspS9I	GGNCC	3 cut(s)	583, 883, 884
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	172, 358
AsuII	TTCGAA	1 cut(s)	840
AvaII	GGWCC	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	887
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	887
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
Bbv12I	GWGCWC	1 cut(s)	1013
BbvI	GCAGC	7 cut(s)	208, 281, 449, 835, 919, 932, 941
BccI	CCATC	2 cut(s)	782, 976
BceAI	ACGGC	1 cut(s)	1126
BclI	TGATCA	3 cut(s)	637, 1062, 1234
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	1034
BfmI	CTRYAG	2 cut(s)	831, 936
BisI	GCNGC	8 cut(s)	148, 222, 270, 438, 824, 921, 930, 933
BlsI	GCNGC	8 cut(s)	149, 223, 271, 439, 825, 922, 931, 934
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	583, 883, 884
BmiI	GGNNCC	3 cut(s)	6, 585, 885
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	4 cut(s)	436, 511, 707, 1032
BpmI	CTGGAG	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	5 cut(s)	142, 303, 586, 978, 1179
BsaXI	ACNNNNNCTCC	4 cut(s)	1160, 1190, 1238, 1268
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 571, 594, 711, 791, 893
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	3 cut(s)	216, 930, 1075
BseDI	CCNNGG	5 cut(s)	142, 303, 586, 978, 1179
BseGI	GGATG	3 cut(s)	526, 1209, 1222
BseLI	CCNNNNNNNGG	6 cut(s)	52, 571, 594, 711, 791, 893
BseMI	GCAATG	3 cut(s)	216, 930, 1075
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	3 cut(s)	131, 153, 1067
BseSI	GKGCMC	1 cut(s)	887
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	7 cut(s)	208, 281, 449, 835, 919, 932, 941
BseYI	CCCAGC	3 cut(s)	467, 725, 901
Bsh1236I	CGCG	2 cut(s)	150, 980
Bsh1285I	CGRYCG	2 cut(s)	148, 284
BshFI	GGCC	4 cut(s)	147, 279, 885, 1203
BsiEI	CGRYCG	2 cut(s)	148, 284
BsiHKAI	GWGCWC	1 cut(s)	1013
BsiSI	CCGG	3 cut(s)	404, 588, 1200
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	6 cut(s)	52, 571, 594, 711, 791, 893
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	4 cut(s)	147, 279, 885, 1203
Bsp119I	TTCGAA	1 cut(s)	840
Bsp120I	GGGCCC	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	887, 1013
Bsp143I	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
BspACI	CCGC	7 cut(s)	148, 224, 334, 435, 978, 980, 1258
BspANI	GGCC	4 cut(s)	147, 279, 885, 1203
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	2 cut(s)	150, 980
BspLI	GGNNCC	3 cut(s)	6, 585, 885
BspMAI	CTGCAG	1 cut(s)	835
BspPI	GGATC	2 cut(s)	12, 1113
BspT104I	TTCGAA	1 cut(s)	840
BsrDI	GCAATG	3 cut(s)	216, 930, 1075
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	5 cut(s)	142, 303, 586, 978, 1179
BssMI	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
BssNI	GRCGYC	1 cut(s)	171
Bst4CI	ACNGT	7 cut(s)	184, 285, 605, 780, 868, 1172, 1183
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	267, 355
BstDEI	CTNAG	2 cut(s)	377, 441
BstDSI	CCRYGG	2 cut(s)	978, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	709
BstF5I	GGATG	3 cut(s)	526, 1209, 1222
BstFNI	CGCG	2 cut(s)	150, 980
BstKTI	GATC	7 cut(s)	7, 610, 640, 1065, 1108, 1128, 1237
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
BstMCI	CGRYCG	2 cut(s)	148, 284
BstMWI	GCNNNNNNNGC	3 cut(s)	926, 929, 938
BstNSI	RCATGY	2 cut(s)	419, 988
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	831, 936
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	2 cut(s)	150, 980
BstV1I	GCAGC	7 cut(s)	208, 281, 449, 835, 919, 932, 941
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	147, 279, 885, 1203
BtgI	CCRYGG	2 cut(s)	978, 1179
BtsCI	GGATG	3 cut(s)	526, 1209, 1222
BtsIMutI	CAGTG	2 cut(s)	610, 672
Cac8I	GCNNGC	2 cut(s)	267, 355
CaiI	CAGNNNCTG	1 cut(s)	935
Cfr13I	GGNCC	3 cut(s)	583, 883, 884
Cfr42I	CCGCGG	1 cut(s)	981
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	73, 601
CviAII	CATG	4 cut(s)	416, 618, 985, 1049
CviQI	GTAC	2 cut(s)	73, 601
DdeI	CTNAG	2 cut(s)	377, 441
DpnI	GATC	7 cut(s)	6, 609, 639, 1064, 1107, 1127, 1236
DpnII	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
EaeI	YGGCCR	3 cut(s)	145, 277, 1201
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	887
Eco47I	GGWCC	1 cut(s)	583
Eco52I	CGGCCG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	883
EcoT38I	GRGCYC	1 cut(s)	887
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	4 cut(s)	419, 621, 988, 1052
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	4 cut(s)	415, 617, 984, 1048
FauI	CCCGC	1 cut(s)	1265
FbaI	TGATCA	3 cut(s)	637, 1062, 1234
Fnu4HI	GCNGC	8 cut(s)	148, 222, 270, 438, 824, 921, 930, 933
FokI	GGATG	3 cut(s)	533, 1196, 1209
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	8 cut(s)	148, 222, 270, 438, 824, 921, 930, 933
FspBI	CTAG	1 cut(s)	1034
GluI	GCNGC	8 cut(s)	148, 222, 270, 438, 824, 921, 930, 933
GsaI	CCCAGC	3 cut(s)	471, 729, 905
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	147, 279, 885, 1203
HapII	CCGG	3 cut(s)	404, 588, 1200
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	419, 621, 988, 1052
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	6 cut(s)	116, 230, 529, 681, 845, 1196
HpaII	CCGG	3 cut(s)	404, 588, 1200
HphI	GGTGA	2 cut(s)	172, 358
Hpy166II	GTNNAC	3 cut(s)	75, 175, 318
Hpy188I	TCNGA	4 cut(s)	364, 393, 637, 803
Hpy188III	TCNNGA	3 cut(s)	86, 785, 1066
Hpy8I	GTNNAC	3 cut(s)	75, 175, 318
Hpy99I	CGWCG	4 cut(s)	98, 289, 1169, 1172
HpyAV	CCTTC	1 cut(s)	1092
HpyCH4III	ACNGT	7 cut(s)	184, 285, 605, 780, 868, 1172, 1183
HpyCH4IV	ACGT	3 cut(s)	177, 199, 738
HpyCH4V	TGCA	9 cut(s)	126, 203, 269, 524, 646, 672, 833, 875, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	926, 929, 938
HpyF3I	CTNAG	2 cut(s)	377, 441
HpySE526I	ACGT	3 cut(s)	177, 199, 738
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	419, 621, 988, 1052
Ksp22I	TGATCA	3 cut(s)	637, 1062, 1234
KspI	CCGCGG	1 cut(s)	981
Kzo9I	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
LmnI	GCTCC	2 cut(s)	917, 1181
Lsp1109I	GCAGC	7 cut(s)	208, 281, 449, 835, 919, 932, 941
LweI	GCATC	4 cut(s)	436, 511, 707, 1032
MaeI	CTAG	1 cut(s)	1034
MaeII	ACGT	3 cut(s)	177, 199, 738
MaeIII	GTNAC	4 cut(s)	178, 195, 370, 1029
MalI	GATC	7 cut(s)	6, 609, 639, 1064, 1107, 1127, 1236
MboI	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
MboII	GAAGA	6 cut(s)	38, 47, 94, 602, 820, 854
MfeI	CAATTG	1 cut(s)	641
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	887, 1013
MluCI	AATT	5 cut(s)	81, 365, 473, 546, 641
MlyI	GAGTC	3 cut(s)	110, 239, 1190
MmeI	TCCRAC	1 cut(s)	144
MroXI	GAANNNNTTC	2 cut(s)	510, 780
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	3 cut(s)	440, 932, 980
MspI	CCGG	3 cut(s)	404, 588, 1200
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	1 cut(s)	641
MvnI	CGCG	2 cut(s)	150, 980
MwoI	GCNNNNNNNGC	3 cut(s)	926, 929, 938
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
NlaIII	CATG	4 cut(s)	419, 621, 988, 1052
NlaIV	GGNNCC	3 cut(s)	6, 585, 885
NmeAIII	GCCGAG	4 cut(s)	123, 147, 328, 1169
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	419, 988
NspV	TTCGAA	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	510, 780
PfeI	GAWTC	3 cut(s)	529, 681, 845
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	8 cut(s)	149, 223, 271, 439, 825, 922, 931, 934
PleI	GAGTC	3 cut(s)	110, 238, 1190
PpsI	GAGTC	3 cut(s)	110, 238, 1190
Ppu21I	YACGTR	1 cut(s)	200
PspFI	CCCAGC	3 cut(s)	467, 725, 901
PspN4I	GGNNCC	3 cut(s)	6, 585, 885
PspOMI	GGGCCC	1 cut(s)	883
PspPI	GGNCC	3 cut(s)	583, 883, 884
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	440, 932
RsaI	GTAC	2 cut(s)	74, 602
RsaNI	GTAC	2 cut(s)	73, 601
SacII	CCGCGG	1 cut(s)	981
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	8 cut(s)	148, 222, 270, 438, 824, 921, 930, 933
Sau3AI	GATC	7 cut(s)	4, 607, 637, 1062, 1105, 1125, 1234
Sau96I	GGNCC	3 cut(s)	583, 883, 884
SchI	GAGTC	3 cut(s)	110, 239, 1190
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	887, 1013
SfaNI	GCATC	4 cut(s)	436, 511, 707, 1032
SfcI	CTRYAG	2 cut(s)	831, 936
Sfr303I	CCGCGG	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	840
SgrBI	CCGCGG	1 cut(s)	981
SinI	GGWCC	1 cut(s)	583
Sse9I	AATT	5 cut(s)	81, 365, 473, 546, 641
SsiI	CCGC	7 cut(s)	148, 224, 334, 435, 978, 980, 1258
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	1034
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	7 cut(s)	184, 285, 605, 780, 868, 1172, 1183
TaiI	ACGT	3 cut(s)	180, 202, 741
TaqI	TCGA	6 cut(s)	93, 233, 287, 840, 1164, 1188
TaqII	GACCGA	1 cut(s)	1134
TasI	AATT	5 cut(s)	81, 365, 473, 546, 641
TatI	WGTACW	2 cut(s)	72, 600
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	529, 681, 845
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	610, 679
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	7 cut(s)	221, 269, 437, 823, 920, 929, 932
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	437, 552
TspGWI	ACGGA	2 cut(s)	442, 909
TspRI	CASTG	2 cut(s)	610, 679
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	583
XagI	CCTNNNNNAGG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	2 cut(s)	419, 988
XmnI	GAANNNNTTC	2 cut(s)	510, 780
XspI	CTAG	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.