Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8138488.1

Orthogroup ID

OG0004645

Physical Location & Seq

Genomic Coordinates Forward (+)

134 .. 627

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8138488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgagtccgagccgattggagcagctcaaagcaccgaacttggtgtcattgccggaaaaaaccaaacgtaatttattggttcggtgcatgcgcgtgggcctcattctctctctgatcgcttcaatctcactcgccctcagcttcgccttctctccccaatccaactggttccccatcctggaccgaaaccgagcccgcaccgccgtctccgccgtcttctccaccaccaccgatgacagcgaactacccaccgacatctcccacattctgttcggtctcggcagctccgtcgacaagtggcgtgaccggtgcccctactccgaaacatggtggaactcgaacaccacacgcgaactggacccagttcaggtacgtgcactcccagtcggaggtccggatggcccggatcgtggtggacagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

141

Amino Acids

15.62

Weight (kDa)

8.77

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11420
fragaria_vesca	FvH4_7g23010 FvH4_7g23010 FvH4_7g23010 FvH4_7g23010 FvH4_7g23030
malus_domestica	MD01G1138900.v1.1 MD07G1203200.v1.1
prunus_persica	Prupe.2G239400_v2.0.a1
pyrus_communis	pycom07g19010
rosa_chinensis	RchiOBHm_Chr1g0368251 RchiOBHm_Chr1g0368271
rosa_laevigata	RLG00000027225 RLG00000027226
rosa_multiflora	Rmu_co8138488.1_g000001 Rmu_sc0006033.1_g000010 Rmu_sc0006033.1_g000013 Rmu_sc0021728.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288720
rosa_rugosa	Rorug01G0339800
rosa_samantha	Rh1AG347100 Rh1AG347200 Rh1BG310100 Rh1BG310200 Rh1CG325500 Rh1CG325600 Rh1DG341900 Rh1DG342000
rosa_wichuraiana	Rw0G001020 Rw1G030890 Rw1G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	2 cut(s)	93, 351
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	3 cut(s)	196, 201, 210
AclWI	GGATC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	5 cut(s)	178, 327, 367, 389, 410
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	25, 141, 285, 421
AluI	AGCT	4 cut(s)	25, 141, 285, 421
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	211, 281
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	2 cut(s)	97, 400
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	22, 282
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AsiGI	ACCGGT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	5 cut(s)	97, 181, 358, 392, 401
AsuC2I	CCSGG	1 cut(s)	404
AvaII	GGWCC	3 cut(s)	181, 358, 392
BaeGI	GKGCMC	2 cut(s)	314, 379
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	34, 294
BccI	CCATC	2 cut(s)	182, 392
BceAI	ACGGC	2 cut(s)	188, 197
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	211, 281
BisI	GCNGC	2 cut(s)	23, 283
BlsI	GCNGC	2 cut(s)	24, 284
Bme1390I	CCNGG	2 cut(s)	179, 404
Bme18I	GGWCC	3 cut(s)	181, 358, 392
BmgT120I	GGNCC	5 cut(s)	97, 181, 358, 392, 401
BmiI	GGNNCC	3 cut(s)	170, 311, 360
BmrFI	CCNGG	2 cut(s)	179, 404
BmrI	ACTGGG	2 cut(s)	356, 377
BmuI	ACTGGG	2 cut(s)	356, 377
BpiI	GAAGAC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	281
BsaWI	WCCGGW	2 cut(s)	306, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 327, 367, 389, 410
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	4 cut(s)	170, 360, 362, 383
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	174, 403
BseLI	CCNNNNNNNGG	5 cut(s)	178, 327, 367, 389, 410
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	4 cut(s)	170, 360, 362, 383
BseSI	GKGCMC	2 cut(s)	314, 379
BseXI	GCAGC	2 cut(s)	34, 294
Bsh1236I	CGCG	2 cut(s)	93, 351
BshFI	GGCC	2 cut(s)	99, 402
BshNI	GGYRCC	1 cut(s)	309
BshTI	ACCGGT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	53, 307, 395, 404
BslI	CCNNNNNNNGG	5 cut(s)	178, 327, 367, 389, 410
BsmAI	GTCTC	2 cut(s)	211, 281
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	99, 402
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	196, 314, 379
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	114, 406
BspACI	CCGC	3 cut(s)	196, 201, 210
BspANI	GGCC	2 cut(s)	99, 402
BspCNI	CTCAG	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	93, 351
BspLI	GGNNCC	3 cut(s)	170, 311, 360
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	4 cut(s)	170, 360, 362, 383
BssAI	RCCGGY	1 cut(s)	306
BssMI	GATC	2 cut(s)	114, 406
Bst2UI	CCWGG	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	89, 196
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	174, 403
BstFNI	CGCG	2 cut(s)	93, 351
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	117, 409
BstMAI	GTCTC	2 cut(s)	211, 281
BstMBI	GATC	2 cut(s)	114, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	177, 402
BstSLI	GKGCMC	2 cut(s)	314, 379
BstUI	CGCG	2 cut(s)	93, 351
BstV1I	GCAGC	2 cut(s)	34, 294
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	99, 402
BtsCI	GGATG	2 cut(s)	174, 403
Cac8I	GCNNGC	2 cut(s)	89, 196
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	5 cut(s)	97, 181, 358, 392, 401
Csp6I	GTAC	1 cut(s)	371
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	2 cut(s)	88, 327
CviJI	RGCY	8 cut(s)	12, 25, 99, 141, 194, 285, 402, 421
CviKI_1	RGCY	8 cut(s)	12, 25, 99, 141, 194, 285, 402, 421
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	116, 408
DpnII	GATC	2 cut(s)	114, 406
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	3 cut(s)	181, 358, 392
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	91, 330
FaiI	YATR	2 cut(s)	89, 328
FatI	CATG	2 cut(s)	87, 326
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	23, 283
FokI	GGATG	2 cut(s)	161, 410
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	23, 283
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	23, 283
HaeIII	GGCC	2 cut(s)	99, 402
HapII	CCGG	4 cut(s)	53, 307, 395, 404
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	91, 330
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	4 cut(s)	53, 307, 395, 404
Hpy166II	GTNNAC	3 cut(s)	292, 377, 416
Hpy188I	TCNGA	4 cut(s)	9, 114, 322, 389
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	3 cut(s)	292, 377, 416
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	67, 373
HpyCH4V	TGCA	2 cut(s)	87, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	67, 373
Hsp92II	CATG	2 cut(s)	91, 330
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	114, 406
LmnI	GCTCC	2 cut(s)	19, 290
Lsp1109I	GCAGC	2 cut(s)	34, 294
MaeII	ACGT	2 cut(s)	67, 373
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	2 cut(s)	116, 408
MboI	GATC	2 cut(s)	114, 406
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	3 cut(s)	196, 314, 379
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	186, 367
MnlI	CCTC	3 cut(s)	110, 146, 383
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	4 cut(s)	53, 307, 395, 404
MspR9I	CCNGG	2 cut(s)	179, 404
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	2 cut(s)	93, 351
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	114, 406
NlaIII	CATG	2 cut(s)	91, 330
NlaIV	GGNNCC	3 cut(s)	170, 311, 360
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	24, 284
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	170, 311, 360
PspPI	GGNCC	5 cut(s)	97, 181, 358, 392, 401
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	23, 283
Sau3AI	GATC	2 cut(s)	114, 406
Sau96I	GGNCC	5 cut(s)	97, 181, 358, 392, 401
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	179, 404
SduI	GDGCHC	3 cut(s)	196, 314, 379
SetI	ASST	8 cut(s)	27, 70, 143, 287, 372, 376, 394, 423
SinI	GGWCC	3 cut(s)	181, 358, 392
SmiMI	CAYNNNNRTG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	196, 201, 210
StyD4I	CCNGG	2 cut(s)	177, 402
TaiI	ACGT	2 cut(s)	70, 376
TaqI	TCGA	2 cut(s)	291, 338
TaqII	GACCGA	2 cut(s)	198, 263
TasI	AATT	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	22, 282
Tsp45I	GTSAC	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	3 cut(s)	181, 358, 392
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.