Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021728.1

Orthogroup ID

OG0004645

Physical Location & Seq

Genomic Coordinates Forward (+)

261 .. 1202

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgagtccgagccgattggagcagctcaaagcaccgaacttggtgtcattgccggaaaaaaccaaacgtaatttattggttcggtgcatgcgcgtgggcctcattctctctctgatcgcttcaatctcactcgccctcagcttcgccttctctccccaatccaactggttccccatcctggaccgaaaccgagcccgcaccgccgtctccgccgtcttctccaccaccaccgatgacagcgaactacccaccgacatctcccacattctgttcggtctcggcagctccgtcgacaagtggcgtgaccggtgcccctactccgaaacatggtggaactcgaacaccacacgcggttacgtctggctggactcgaagccggagaatgacgtttcagcttatatcccgtaccgggtgtcggagaactggacccagttcaggtacgtgcactcccagtcggaggtccggatggcccggatcgtggtggacagctttaacctccggctgccgaacgtgagatggttcgttatgggagacgatgacacgatcttcttccccgacaacttggtctcggtgctatcacagtacgatcataaccagatgtactacattggcgggaactcggagagcgtcgagcaggacgtgacgcacgcgtacgacatggcgtttggcggcggcgggttcgccatcagctacccgctggcggcgcgtttggcggagctgatggacggctgtttggaccggtacttcaatatgtacggctctgatcagagggtgtgggcttgcatggtcgagatcggtgtgcctctcacgaagctgagtgggttccaccaggtacgtacttttgatacgtgtcctgcattaggtttagggtttaatacagtaactcctattgatcgacacctctgtttttttgtggagaaagccgcaagatatgtaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

313

Amino Acids

35.6

Weight (kDa)

5.88

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11420
fragaria_vesca	FvH4_7g23010 FvH4_7g23010 FvH4_7g23010 FvH4_7g23010 FvH4_7g23030
malus_domestica	MD01G1138900.v1.1 MD07G1203200.v1.1
prunus_persica	Prupe.2G239400_v2.0.a1
pyrus_communis	pycom07g19010
rosa_chinensis	RchiOBHm_Chr1g0368251 RchiOBHm_Chr1g0368271
rosa_laevigata	RLG00000027225 RLG00000027226
rosa_multiflora	Rmu_co8138488.1_g000001 Rmu_sc0006033.1_g000010 Rmu_sc0006033.1_g000013 Rmu_sc0021728.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288720
rosa_rugosa	Rorug01G0339800
rosa_samantha	Rh1AG347100 Rh1AG347200 Rh1BG310100 Rh1BG310200 Rh1CG325500 Rh1CG325600 Rh1DG341900 Rh1DG342000
rosa_wichuraiana	Rw0G001020 Rw1G030890 Rw1G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	4 cut(s)	93, 351, 650, 706
AccIII	TCCGGA	1 cut(s)	462
AclWI	GGATC	1 cut(s)	482
AfiI	CCNNNNNNNGG	9 cut(s)	178, 327, 409, 415, 435, 457, 478, 700, 860
AflIII	ACRYGT	2 cut(s)	648, 848
AgeI	ACCGGT	2 cut(s)	306, 738
AgsI	TTSAA	2 cut(s)	123, 748
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	177, 828
AluBI	AGCT	8 cut(s)	25, 141, 285, 395, 489, 690, 718, 814
AluI	AGCT	8 cut(s)	25, 141, 285, 395, 489, 690, 718, 814
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	4 cut(s)	211, 281, 525, 571
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	482
Aor13HI	TCCGGA	1 cut(s)	462
AoxI	GGCC	2 cut(s)	97, 468
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	22, 282, 502
ArsI	GACNNNNNNTTYG	4 cut(s)	29, 61, 647, 679
AsiGI	ACCGGT	2 cut(s)	306, 738
AspLEI	GCGC	2 cut(s)	93, 706
AspS9I	GGNCC	6 cut(s)	97, 181, 426, 460, 469, 736
AsuC2I	CCSGG	2 cut(s)	410, 472
AvaII	GGWCC	4 cut(s)	181, 426, 460, 736
BaeGI	GKGCMC	2 cut(s)	314, 447
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	34, 294, 489
BccI	CCATC	5 cut(s)	182, 460, 510, 692, 715
BceAI	ACGGC	4 cut(s)	188, 197, 742, 772
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	2 cut(s)	179, 830
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	410, 472
BcoDI	GTCTC	4 cut(s)	211, 281, 525, 571
BisI	GCNGC	7 cut(s)	23, 283, 503, 670, 673, 702, 924
BlsI	GCNGC	7 cut(s)	24, 284, 504, 671, 674, 703, 925
Bme1390I	CCNGG	4 cut(s)	179, 410, 472, 830
Bme18I	GGWCC	4 cut(s)	181, 426, 460, 736
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	6 cut(s)	97, 181, 426, 460, 469, 736
BmiI	GGNNCC	4 cut(s)	170, 311, 428, 824
BmrFI	CCNGG	4 cut(s)	179, 410, 472, 830
BmrI	ACTGGG	2 cut(s)	424, 445
BmuI	ACTGGG	2 cut(s)	424, 445
BpiI	GAAGAC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	2 cut(s)	410, 472
BsaAI	YACGTR	3 cut(s)	442, 836, 849
BsaI	GGTCTC	2 cut(s)	281, 571
BsaWI	WCCGGW	3 cut(s)	306, 462, 738
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 868, 898
Bsc4I	CCNNNNNNNGG	9 cut(s)	178, 327, 409, 415, 435, 457, 478, 700, 860
Bse118I	RCCGGY	2 cut(s)	306, 738
Bse1I	ACTGG	4 cut(s)	170, 428, 430, 451
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	179, 830
BseGI	GGATG	2 cut(s)	174, 471
BseLI	CCNNNNNNNGG	9 cut(s)	178, 327, 409, 415, 435, 457, 478, 700, 860
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	151, 806
BseNI	ACTGG	4 cut(s)	170, 428, 430, 451
BseSI	GKGCMC	2 cut(s)	314, 447
BseXI	GCAGC	3 cut(s)	34, 294, 489
Bsh1236I	CGCG	4 cut(s)	93, 351, 650, 706
BshFI	GGCC	2 cut(s)	99, 470
BshNI	GGYRCC	1 cut(s)	309
BshTI	ACCGGT	2 cut(s)	306, 738
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	8 cut(s)	53, 307, 377, 409, 463, 472, 499, 739
BsiWI	CGTACG	1 cut(s)	651
BslI	CCNNNNNNNGG	9 cut(s)	178, 327, 409, 415, 435, 457, 478, 700, 860
BsmAI	GTCTC	4 cut(s)	211, 281, 525, 571
BsmBI	CGTCTC	2 cut(s)	211, 525
BsnI	GGCC	2 cut(s)	99, 470
Bso31I	GGTCTC	2 cut(s)	281, 571
Bsp1286I	GDGCHC	3 cut(s)	196, 314, 447
Bsp13I	TCCGGA	1 cut(s)	462
Bsp143I	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
BspANI	GGCC	2 cut(s)	99, 470
BspCNI	CTCAG	2 cut(s)	150, 807
BspEI	TCCGGA	1 cut(s)	462
BspFNI	CGCG	4 cut(s)	93, 351, 650, 706
BspLI	GGNNCC	4 cut(s)	170, 311, 428, 824
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	309
BspTNI	GGTCTC	2 cut(s)	281, 571
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	306, 738
BsrI	ACTGG	4 cut(s)	170, 428, 430, 451
BssAI	RCCGGY	2 cut(s)	306, 738
BssMI	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
Bst2UI	CCWGG	2 cut(s)	179, 830
Bst4CI	ACNGT	3 cut(s)	582, 880, 939
BstBAI	YACGTR	3 cut(s)	442, 836, 849
BstC8I	GCNNGC	5 cut(s)	89, 196, 648, 699, 781
BstDEI	CTNAG	2 cut(s)	137, 815
BstENI	CCTNNNNNAGG	1 cut(s)	858
BstF5I	GGATG	2 cut(s)	174, 471
BstFNI	CGCG	4 cut(s)	93, 351, 650, 706
BstHHI	GCGC	2 cut(s)	93, 706
BstKTI	GATC	7 cut(s)	117, 477, 546, 589, 766, 795, 895
BstMAI	GTCTC	4 cut(s)	211, 281, 525, 571
BstMBI	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 209, 703, 710
BstNI	CCWGG	2 cut(s)	179, 830
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	4 cut(s)	177, 408, 470, 828
BstSLI	GKGCMC	2 cut(s)	314, 447
BstSNI	TACGTA	1 cut(s)	836
BstUI	CGCG	4 cut(s)	93, 351, 650, 706
BstV1I	GCAGC	3 cut(s)	34, 294, 489
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	99, 470
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	174, 471
Cac8I	GCNNGC	5 cut(s)	89, 196, 648, 699, 781
CfoI	GCGC	2 cut(s)	93, 706
Cfr10I	RCCGGY	2 cut(s)	306, 738
Cfr13I	GGNCC	6 cut(s)	97, 181, 426, 460, 469, 736
CseI	GACGC	2 cut(s)	616, 652
CsiI	ACCWGGT	1 cut(s)	828
CspAI	ACCGGT	2 cut(s)	306, 738
CviAII	CATG	4 cut(s)	88, 327, 658, 784
DdeI	CTNAG	2 cut(s)	137, 815
DpnI	GATC	7 cut(s)	116, 476, 545, 588, 765, 794, 894
DpnII	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
DrdI	GACNNNNNNGTC	1 cut(s)	563
DseDI	GACNNNNNNGTC	1 cut(s)	563
EciI	GGCGGA	2 cut(s)	199, 728
Eco105I	TACGTA	1 cut(s)	836
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	2 cut(s)	281, 571
Eco47I	GGWCC	4 cut(s)	181, 426, 460, 736
EcoNI	CCTNNNNNAGG	1 cut(s)	858
EcoRII	CCWGG	2 cut(s)	177, 828
EcoT38I	GRGCYC	1 cut(s)	196
Esp3I	CGTCTC	2 cut(s)	211, 525
FaeI	CATG	4 cut(s)	91, 330, 661, 787
FaiI	YATR	9 cut(s)	89, 328, 399, 527, 591, 659, 752, 785, 933
FatI	CATG	4 cut(s)	87, 326, 657, 783
FauI	CCCGC	4 cut(s)	203, 605, 668, 702
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	7 cut(s)	23, 283, 503, 670, 673, 702, 924
FokI	GGATG	2 cut(s)	161, 478
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	7 cut(s)	23, 283, 503, 670, 673, 702, 924
GlaI	GCGC	2 cut(s)	92, 705
GluI	GCNGC	7 cut(s)	23, 283, 503, 670, 673, 702, 924
HaeIII	GGCC	2 cut(s)	99, 470
HapII	CCGG	8 cut(s)	53, 307, 377, 409, 463, 472, 499, 739
HgaI	GACGC	2 cut(s)	616, 652
HhaI	GCGC	2 cut(s)	93, 706
Hin1II	CATG	4 cut(s)	91, 330, 661, 787
Hin6I	GCGC	2 cut(s)	91, 704
HinP1I	GCGC	2 cut(s)	91, 704
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	4, 368
HpaII	CCGG	8 cut(s)	53, 307, 377, 409, 463, 472, 499, 739
Hpy166II	GTNNAC	3 cut(s)	292, 445, 484
Hpy188I	TCNGA	8 cut(s)	9, 114, 322, 418, 457, 622, 763, 768
Hpy188III	TCNNGA	3 cut(s)	463, 790, 808
Hpy8I	GTNNAC	3 cut(s)	292, 445, 484
Hpy99I	CGWCG	2 cut(s)	293, 632
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	3 cut(s)	582, 880, 939
HpyCH4IV	ACGT	8 cut(s)	67, 357, 387, 441, 510, 639, 835, 848
HpyCH4V	TGCA	4 cut(s)	87, 445, 783, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 209, 703, 710
HpyF3I	CTNAG	2 cut(s)	137, 815
HpySE526I	ACGT	8 cut(s)	67, 357, 387, 441, 510, 639, 835, 848
Hsp92II	CATG	4 cut(s)	91, 330, 661, 787
HspAI	GCGC	2 cut(s)	91, 704
Kpn2I	TCCGGA	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
LmnI	GCTCC	3 cut(s)	19, 290, 715
Lsp1109I	GCAGC	3 cut(s)	34, 294, 489
MabI	ACCWGGT	1 cut(s)	828
MaeII	ACGT	8 cut(s)	67, 357, 387, 441, 510, 639, 835, 848
MaeIII	GTNAC	4 cut(s)	302, 353, 640, 880
MalI	GATC	7 cut(s)	116, 476, 545, 588, 765, 794, 894
MboI	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
MboII	GAAGA	3 cut(s)	208, 538, 541
MhlI	GDGCHC	3 cut(s)	196, 314, 447
MluCI	AATT	1 cut(s)	70
MluI	ACGCGT	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	13, 362
MmeI	TCCRAC	3 cut(s)	186, 396, 435
MnlI	CCTC	7 cut(s)	110, 146, 451, 506, 762, 813, 911
MroI	TCCGGA	1 cut(s)	462
MseI	TTAA	2 cut(s)	492, 873
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	8 cut(s)	53, 307, 377, 409, 463, 472, 499, 739
MspR9I	CCNGG	4 cut(s)	179, 410, 472, 830
MvaI	CCWGG	2 cut(s)	179, 830
MvnI	CGCG	4 cut(s)	93, 351, 650, 706
MwoI	GCNNNNNNNGC	4 cut(s)	200, 209, 703, 710
NciI	CCSGG	2 cut(s)	410, 472
NdeII	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
NlaIII	CATG	4 cut(s)	91, 330, 661, 787
NlaIV	GGNNCC	4 cut(s)	170, 311, 428, 824
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	302, 640
NspI	RCATGY	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 636
Pfl23II	CGTACG	1 cut(s)	651
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	2 cut(s)	306, 738
PkrI	GCNGC	7 cut(s)	24, 284, 504, 671, 674, 703, 925
PleI	GAGTC	2 cut(s)	12, 362
PpsI	GAGTC	2 cut(s)	12, 362
Ppu21I	YACGTR	3 cut(s)	442, 836, 849
Psp6I	CCWGG	2 cut(s)	177, 828
PspGI	CCWGG	2 cut(s)	177, 828
PspLI	CGTACG	1 cut(s)	651
PspN4I	GGNNCC	4 cut(s)	170, 311, 428, 824
PspPI	GGNCC	6 cut(s)	97, 181, 426, 460, 469, 736
RseI	CAYNNNNRTG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	492, 873
SatI	GCNGC	7 cut(s)	23, 283, 503, 670, 673, 702, 924
Sau3AI	GATC	7 cut(s)	114, 474, 543, 586, 763, 792, 892
Sau96I	GGNCC	6 cut(s)	97, 181, 426, 460, 469, 736
SchI	GAGTC	2 cut(s)	13, 362
ScrFI	CCNGG	4 cut(s)	179, 410, 472, 830
SduI	GDGCHC	3 cut(s)	196, 314, 447
SexAI	ACCWGGT	1 cut(s)	828
SinI	GGWCC	4 cut(s)	181, 426, 460, 736
SmiMI	CAYNNNNRTG	1 cut(s)	92
SnaBI	TACGTA	1 cut(s)	836
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	70
StyD4I	CCNGG	4 cut(s)	177, 408, 470, 828
TaaI	ACNGT	3 cut(s)	582, 880, 939
TaiI	ACGT	8 cut(s)	70, 360, 390, 444, 513, 642, 838, 851
TaqI	TCGA	6 cut(s)	291, 338, 371, 630, 789, 895
TaqII	GACCGA	2 cut(s)	198, 263
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	4 cut(s)	672, 675, 704, 926
Tru1I	TTAA	2 cut(s)	492, 873
Tru9I	TTAA	2 cut(s)	492, 873
TseFI	GTSAC	2 cut(s)	302, 640
TseI	GCWGC	3 cut(s)	22, 282, 502
Tsp45I	GTSAC	2 cut(s)	302, 640
TspGWI	ACGGA	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	4 cut(s)	181, 426, 460, 736
XagI	CCTNNNNNAGG	1 cut(s)	858
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.